Factsheet for VIT_07s0005g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69147	Soybean	nucleus	78.33	78.66
KRH33649	Soybean	nucleus	77.9	78.23
KRG96607	Soybean	extracellular	77.47	77.14
KRH68340	Soybean	nucleus	77.04	76.71
GSMUA_AchrUn_...	Banana	extracellular	60.52	71.76
GSMUA_Achr8P06180_001	Banana	extracellular	59.66	70.74
AT3G62110.1	Thale cress	vacuole	68.88	68.15
Bra003485.1-P	Field mustard	extracellular, golgi	66.74	67.9
CDX67875	Canola	extracellular, golgi	66.74	67.9
CDY25090	Canola	extracellular, golgi	66.74	67.9
TraesCS4A01G358700.1	Wheat	extracellular	64.16	66.59
CDY11403	Canola	extracellular, plasma membrane	65.24	66.09
Bra007662.1-P	Field mustard	extracellular, plasma membrane	65.24	66.09
Os03t0833800-01	Rice	extracellular	66.95	65.55
EER90587	Sorghum	extracellular	66.52	65.26
CDX76617	Canola	extracellular, plasma membrane	64.16	65.0
HORVU5Hr1G117470.3	Barley	extracellular	65.67	64.29
TraesCS5B01G513100.1	Wheat	extracellular	65.45	64.08
Os07t0245200-01	Rice	plasma membrane	58.58	61.21
EER96131	Sorghum	extracellular, mitochondrion	64.81	60.52
Zm00001d034727_P003	Maize	plastid	65.24	59.26
Zm00001d019282_P001	Maize	mitochondrion	63.95	58.66
TraesCS5D01G513600.1	Wheat	plastid	65.02	57.06
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	52.79	54.07
VIT_07s0005g00890.t01	Wine grape	extracellular	52.15	50.94
VIT_02s0025g00260.t01	Wine grape	extracellular	49.79	48.33
VIT_02s0025g01330.t01	Wine grape	extracellular	46.35	48.32
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	48.71	47.39
VIT_00s2630g00010.t01	Wine grape	cytosol	6.65	46.97
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	49.14	44.29
VIT_05s0077g01740.t01	Wine grape	nucleus	21.89	43.22
VIT_13s0139g00110.t01	Wine grape	cytosol	8.8	42.71
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	44.64	42.19
VIT_16s0050g01120.t01	Wine grape	cytosol	13.95	34.76
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	23.82	23.08
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	48.5	21.5

Protein Annotations

EntrezGene:100260519	wikigene:100260519	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CBI37055	ProteinID:CBI37055.3
UniProt:D7U2T9	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100260519
wikigene:LOC100260519	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF9	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00015CA93A	ArrayExpress:VIT_07s0005g02590
EnsemblPlantsGene:VIT_07s0005g02590	EnsemblPlants:VIT_07s0005g02590.t01	unigene:Vvi.18356	RefSeq:XP_002273855	RefSeq:XP_002273855.2	SEG:seg

Description

No Description!

Coordinates

chr7:-:4907990..4912423

Molecular Weight (calculated)

51672.3 Da

IEP (calculated)

5.232

GRAVY (calculated)

-0.054

Length

466 amino acids

Sequence
(BLAST)

001: MRRFFTLVDV LLVLLLFSEA PWAVWGSPHC DQTSSGVIRP HSVAITEFGA VGDGVTLNTK AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFDLISHLTL
101: WLDKDAVILG SMNSNDWPVI DPLPSYGRGR ELPGRRHRSL IYGCNLTDVI VTGDNGTIDG QGSIWWNWFQ KKTLNYTRPH LVEFINSTGV VISNVTFLNS
201: PFWTIHPVYC SQVIIQNVTI LAPLDSPNTD GIDPDSSNDV CIEDCYISTG DDLIAIKSGW DEYGISYARP STNIIIRRLV GKTNSSAGIA IGSEMSGGVS
301: EVHAESLQFF NSKTGIRIKT SPGRGGYVRN IYISDMNLVD VKIAIRFTGQ YGEHPDEFYD PTALPIIENI TVKDVMGENI KFAGLLEGIE GDNFVNICLS
401: NITLNVTSES PWNCSYIHGY SDLVSPEACE PLGERIYPGH VLDCYHLPTH LWSMSNRKRS SWLRSW

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.