Factsheet for VIT_11s0016g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19342	Soybean	endoplasmic reticulum	81.54	81.87
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	81.54	81.71
Solyc07g042160.2.1	Tomato	nucleus	78.3	78.14
Solyc12g009210.1.1	Tomato	nucleus	77.69	77.37
PGSC0003DMT400007594	Potato	extracellular	77.69	77.37
GSMUA_Achr3P10280_001	Banana	mitochondrion	73.43	75.57
KRH12568	Soybean	plastid	74.85	75.46
GSMUA_Achr5P22120_001	Banana	extracellular	74.85	75.0
GSMUA_Achr9P18190_001	Banana	mitochondrion	74.24	74.54
KRH37525	Soybean	extracellular, plasma membrane	74.64	74.49
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	74.24	72.33
CDX96676	Canola	extracellular, golgi, plastid	74.04	71.99
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	73.83	71.79
CDX83782	Canola	extracellular, golgi, plastid	73.83	71.79
GSMUA_Achr11P...	Banana	mitochondrion	68.36	68.64
Os02t0781000-01	Rice	extracellular	39.55	68.42
TraesCS6B01G371200.2	Wheat	mitochondrion	67.55	67.27
TraesCS6D01G320600.1	Wheat	mitochondrion	67.14	66.87
TraesCS6A01G340000.1	Wheat	mitochondrion	67.14	66.87
Zm00001d052103_P001	Maize	plasma membrane	66.94	66.67
EES05901	Sorghum	extracellular, golgi	67.34	66.4
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	64.3	63.53
VIT_00s2630g00010.t01	Wine grape	cytosol	7.3	54.55
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	42.19	44.64
VIT_02s0025g01330.t01	Wine grape	extracellular	39.35	43.4
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	37.53	40.66
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	42.39	40.43
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	39.15	40.29
VIT_02s0025g00260.t01	Wine grape	extracellular	39.15	40.21
VIT_13s0139g00110.t01	Wine grape	cytosol	7.71	39.58
VIT_07s0005g00890.t01	Wine grape	extracellular	38.13	39.41
VIT_05s0077g01740.t01	Wine grape	nucleus	16.84	35.17
VIT_16s0050g01120.t01	Wine grape	cytosol	11.56	30.48
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	22.72	23.28
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	40.97	19.22

Protein Annotations

EntrezGene:100249126	wikigene:100249126	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:AM453785	ProteinID:CAN69988
ProteinID:CAN69988.1	ProteinID:CBI27777	ProteinID:CBI27777.3	UniProt:D7TCB9	EMBL:FN595756	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100249126	wikigene:LOC100249126	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI00015C9101	ArrayExpress:VIT_11s0016g00720	EnsemblPlantsGene:VIT_11s0016g00720	EnsemblPlants:VIT_11s0016g00720.t01	unigene:Vvi.7991	RefSeq:XP_002277239
RefSeq:XP_002277239.1	RefSeq:XP_010656099.1	RefSeq:XP_010656100.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:690620..699749

Molecular Weight (calculated)

55339.3 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.220

Length

493 amino acids

Sequence
(BLAST)

001: MVETASFGRF HFNHHRPDLK RWIPAFLSSH RTLFTILWIA AFASVFVWQR NIVEGLLTFR RAPARPLPRL RPAVYNLTDF GGVGDSVTVN TEAFERAISA
101: ISKLGKKGGG QLNVPAGNWL TAPFNLTSHM TLFLDQDAVI LGIQDEKYWP LMPPLPSYGY GREHRGARYG SLIHGQNLKD VVITGHNGTI NGQGQTWWKK
201: YRQKLLNHTR GPLVQIMWSS DIVISNITLR DSPFWTLHPY DCKNVTIKNV TILAPIFEAP NTDGIDPDSC EDMVIEDCYI SVGDDGIAIK SGWDQYGVAY
301: GRPSVNILIR NLVIRSMVSA GVSIGSEMSG GVSNVTVENL LVWNSRRAVR IKTSPGRGGY VQHINYRNLT FDNVRVGIVI KTDYNEHPDD GFDPKALPIL
401: EDISFTGVHG QGVRVPVRIH GSEEIPVKKV TFRDMSVGIT YKKKHIFQCA YVEGRVIGTV FPAPCENLDR YDEQEQLIKH SKSQNVTDID YDF

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.