Factsheet for VIT_02s0025g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59960	Soybean	nucleus	80.21	78.25
KRH41230	Soybean	nucleus	79.79	77.53
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	76.46	76.62
GSMUA_Achr4P05580_001	Banana	cytosol	43.54	66.99
GSMUA_Achr11P...	Banana	cytosol	42.29	65.06
Os06t0106800-01	Rice	extracellular	64.38	63.71
VIT_13s0139g00110.t01	Wine grape	cytosol	12.71	63.54
GSMUA_Achr11P...	Banana	cytosol	40.0	62.95
GSMUA_Achr11P...	Banana	extracellular	61.88	62.4
Zm00001d035899_P001	Maize	extracellular	62.5	61.73
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	25.83	61.69
EER89047	Sorghum	extracellular, vacuole	63.54	61.62
TraesCS5A01G513600.1	Wheat	extracellular	56.88	60.53
Os03t0124900-01	Rice	extracellular	57.71	60.48
EER95599	Sorghum	extracellular	57.08	59.18
Zm00001d027441_P001	Maize	plasma membrane	56.67	58.75
TraesCS7D01G016300.2	Wheat	extracellular	58.75	57.67
VIT_00s2630g00010.t01	Wine grape	cytosol	7.92	57.58
VIT_16s0050g01120.t01	Wine grape	cytosol	22.08	56.68
TraesCS4B01G344700.1	Wheat	extracellular	57.29	56.58
TraesCS7A01G019900.1	Wheat	cytosol	30.42	54.48
TraesCSU01G066000.1	Wheat	golgi, unclear	59.17	53.99
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	58.33	53.74
Zm00001d018548_P001	Maize	cytosol	25.83	53.45
TraesCS7A01G019500.1	Wheat	cytosol	29.79	53.36
Zm00001d010681_P001	Maize	cytosol	30.0	50.88
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	48.33	49.79
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	43.75	46.15
VIT_02s0025g01330.t01	Wine grape	extracellular	42.71	45.86
VIT_07s0005g00890.t01	Wine grape	extracellular	45.21	45.49
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.25	44.32
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	44.79	41.59
TraesCS7A01G019700.1	Wheat	cytosol	10.62	41.46
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	40.21	39.15
VIT_05s0077g01740.t01	Wine grape	nucleus	18.96	38.56
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	65.42	29.88
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	23.75	23.7

Protein Annotations

EntrezGene:100255362	wikigene:100255362	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CCB58194	ProteinID:CCB58194.1
UniProt:F6HUM8	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100255362	wikigene:LOC100255362	PFAM:PF00295	PFAM:PF12708	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7
InterPro:Pectate_lyase_SF_prot	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	TIGR:TC59719	TMHMM:TMhelix
UniParc:UPI00015CD392	ArrayExpress:VIT_02s0025g00260	EnsemblPlantsGene:VIT_02s0025g00260	EnsemblPlants:VIT_02s0025g00260.t01	unigene:Vvi.1237	RefSeq:XP_002278930
RefSeq:XP_002278930.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:377931..380044

Molecular Weight (calculated)

52184.0 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.059

Length

480 amino acids

Sequence
(BLAST)

001: MELSKSLRTA RVVGVVSVVV VLVLLSTNGA ESRKHWVFDY FEYSAINCRA HSASLTDFGG VGDGTTSNTK AFQAAIDHLS QFASDGGSQL FVPPGRWLTG
101: SFNLTSHFTL YLHKDAVLLA SQDEHEWPVI DPLPSYGRGR DTQGGRYISL IFGTNLTDVV ITGENGTIDG QGALWWAKFH KGELKYTRPY LIEIMHSDNV
201: QISSLTLVNS PSWNVHPVYS SNVIIQGLTI TAPVTSPNTD GINPDSCTNT RIEDCYIVSG DDCIAVKSGW DEYGIAYGMP TKQLVIRRLT CISPFSATIA
301: LGSEMSGGIE DVRAEDILAI DTESGVRIKT AVGRGGYVKD IYVRSMIMKT MKWAFWMTGN YGSHADNNYD PNALPAIQGI NYRDMVAENV TMAGRLEGIS
401: GDPFTGICIS NVTIGLAKKA KKAPWTCTDI AGITSGVVPQ PCDLLPDQGP EKIVACNFPT DSLPIDTVEV QTCSYWGKYL

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.