Factsheet for TraesCS4B01G344700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 2
extracellular 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G513600.1	Wheat	extracellular	88.89	95.79
Os03t0124900-01	Rice	extracellular	80.04	84.93
Zm00001d027441_P001	Maize	plasma membrane	78.19	82.07
EER95599	Sorghum	extracellular	77.16	80.99
PGSC0003DMT400094734	Potato	cytosol	14.81	68.57
Zm00001d018548_P001	Maize	cytosol	32.72	68.53
Zm00001d010681_P001	Maize	cytosol	39.3	67.49
CDY69951	Canola	cytosol	16.87	65.08
CDY10898	Canola	cytosol	6.58	62.75
Solyc01g094970.2.1	Tomato	extracellular	48.97	58.48
CDY70893	Canola	cytosol	43.0	58.38
PGSC0003DMT400055769	Potato	extracellular	56.38	57.44
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	56.58	57.41
VIT_02s0025g00260.t01	Wine grape	extracellular	56.58	57.29
KRH48075	Soybean	extracellular	56.79	57.26
Solyc08g081480.2.1	Tomato	extracellular	56.58	56.94
KRH48076	Soybean	extracellular	55.35	56.75
CDY69255	Canola	cytosol	43.83	56.65
Solyc05g049980.2.1	Tomato	extracellular	56.58	56.58
PGSC0003DMT400032104	Potato	extracellular	56.17	56.52
KRH41230	Soybean	nucleus	57.0	56.07
CDY65355	Canola	extracellular	54.32	55.93
KRH59960	Soybean	nucleus	56.38	55.69
PGSC0003DMT400000538	Potato	extracellular	54.32	55.58
KRH06594	Soybean	mitochondrion	55.97	55.4
Bra007609.1-P	Field mustard	extracellular	53.5	55.32
CDY48913	Canola	extracellular	53.5	55.2
KRH00832	Soybean	nucleus	54.73	54.96
KRH40394	Soybean	extracellular, nucleus	54.32	54.55
Bra019299.1-P	Field mustard	extracellular, plasma membrane	53.29	52.54
CDY44105	Canola	cytosol, nucleus, plasma membrane	48.77	52.43
AT4G23500.1	Thale cress	extracellular, plasma membrane	53.09	52.12
Bra013697.1-P	Field mustard	extracellular, plasma membrane	52.67	51.93
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.87	46.59
TraesCS3B01G253000.1	Wheat	extracellular	42.8	46.22
AT3G61490.4	Thale cress	cytosol, plastid	55.56	45.84
CDY10899	Canola	cytosol	8.85	44.79
TraesCS5B01G513100.1	Wheat	extracellular	42.59	43.49
TraesCS5B01G097100.2	Wheat	extracellular	38.68	41.87
TraesCS7B01G224700.1	Wheat	plastid	41.56	41.65
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	37.45	39.82
TraesCS6B01G371200.2	Wheat	mitochondrion	39.51	38.79
TraesCS5B01G210900.1	Wheat	plastid	40.33	36.91
Solyc06g030520.1.1	Tomato	cytosol	7.61	32.46
PGSC0003DMT400065330	Potato	nucleus	11.32	26.83
KRH33610	Soybean	plastid	9.47	25.56
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	20.58	21.64

Protein Annotations

EnsemblPlants:TraesCS4B01G344700.1	EnsemblPlantsGene:TraesCS4B01G344700	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF39	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr4B:-:638122352..638125071

Molecular Weight (calculated)

52828.9 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.076

Length

486 amino acids

Sequence
(BLAST)

001: MAARRAAALQ VTEPPVPLKS PLWLWFCSAR IGTDGWVWFL PSFLQVAVAV VALALCAAGG AGCRKHVRRV TEYGAVGDDR TLNTAAFASA VADLGRRAGD
101: GGAALVVPEG RWLTGPFNLT SHFTLFLHYG AEILASQDLD DWPLIAPLPS YGRGRDEPGP RYSNFIGGSN LTDVIISGHN GTINGQGQVW WDKFHAKELH
201: YTRGYLLELL YSRDIIISNV TFVDAPSWNL HPTYCTNVTI SGVTILAPVH SPNTDGIDPD SSSHVKIEDC YIVSGDDCIA VKSGWDEYGI KFNMPSQHIV
301: VRRLTCISPT SAMIALGSEM SGGIQDVRVE DNIAINTESA VRIKSGVGRG GFVRDVFVRR LSLHTMKWVF WMTGNYGQHP DNSSDPKALP EVTGINYRDV
401: FAENVTMAGR MEGIPNDPYT GICMSNVTAQ LAPKAKKLQW NCTDVQGVAY GVSPEPCPEL GAEGKPCTFP EEELVIGPPE LPKCTY

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.