Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g030520.1.1 | Tomato | cytosol | 26.83 | 48.25 |
| PGSC0003DMT400094734 | Potato | cytosol | 20.0 | 39.05 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 16.1 | 26.83 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 23.41 | 23.88 |
| PGSC0003DMT400000538 | Potato | extracellular | 40.49 | 17.47 |
| GSMUA_Achr11P... | Banana | cytosol | 25.85 | 16.99 |
| GSMUA_Achr11P... | Banana | cytosol | 24.88 | 16.72 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 20.98 | 16.04 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 24.39 | 16.03 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 20.49 | 15.67 |
| PGSC0003DMT400055769 | Potato | extracellular | 35.12 | 15.09 |
| KRH48075 | Soybean | extracellular | 32.68 | 13.9 |
| PGSC0003DMT400041391 | Potato | cytosol | 11.22 | 13.86 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 31.22 | 13.36 |
| KRH06594 | Soybean | mitochondrion | 31.71 | 13.24 |
| KRH00832 | Soybean | nucleus | 31.22 | 13.22 |
| PGSC0003DMT400032104 | Potato | extracellular | 30.73 | 13.04 |
| KRH40394 | Soybean | extracellular, nucleus | 30.73 | 13.02 |
| CDY65355 | Canola | extracellular | 29.27 | 12.71 |
| KRH48076 | Soybean | extracellular | 29.27 | 12.66 |
| Bra007609.1-P | Field mustard | extracellular | 28.78 | 12.55 |
| CDY48913 | Canola | extracellular | 28.78 | 12.53 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 26.83 | 12.2 |
| PGSC0003DMT400024595 | Potato | cytosol | 27.32 | 11.74 |
| Os03t0124900-01 | Rice | extracellular | 25.85 | 11.57 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 26.83 | 11.32 |
| GSMUA_Achr11P... | Banana | extracellular | 25.85 | 11.13 |
| Zm00001d027441_P001 | Maize | plasma membrane | 24.39 | 10.8 |
| Os06t0106800-01 | Rice | extracellular | 25.37 | 10.72 |
| EER95599 | Sorghum | extracellular | 23.41 | 10.37 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 29.76 | 10.36 |
| Zm00001d035899_P001 | Maize | extracellular | 24.39 | 10.29 |
| EER89047 | Sorghum | extracellular, vacuole | 24.39 | 10.1 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 21.95 | 9.2 |
| PGSC0003DMT400018848 | Potato | extracellular | 20.0 | 8.97 |
| PGSC0003DMT400081328 | Potato | extracellular | 19.51 | 8.71 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 21.95 | 8.64 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 21.95 | 8.56 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 18.05 | 7.61 |
| PGSC0003DMT400031687 | Potato | extracellular | 16.1 | 7.38 |
| PGSC0003DMT400036866 | Potato | extracellular, golgi | 14.15 | 5.95 |
| PGSC0003DMT400007594 | Potato | extracellular | 14.15 | 5.86 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 9.76 | 4.2 |
| Zm00001d010681_P001 | Maize | cytosol | 5.37 | 3.89 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 2.44 | 2.84 |
| Zm00001d018548_P001 | Maize | cytosol | 1.95 | 1.72 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065330 | EnsemblPlantsGene:PGSC0003DMG400025396 | InterPro:Pectin_lyase_fold/virulence | ncoils:Coil | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF12 |
| PGSC:PGSC0003DMG400025396 | SEG:seg | SUPFAM:SSF51126 | UniParc:UPI000295158A | UniProt:M1CDS9 | MapMan:35.1 |
Description
Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400025396]
Coordinates
chr6:-:8218416..8227274
Molecular Weight (calculated)
24303.7 Da
IEP (calculated)
10.543
GRAVY (calculated)
-1.668
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MKWVFWMTDN YGSHADTHWD PKALPEIKEI NYRDVVAENV LMAGQLDWIF GDPFTRICMS NVIIGLAEKS KKNPWACTNI EGISSSVQPP PCQKPKLRVA
101: NSKSYLDLGP GPTSDIVHLK SCKIHKKKKK KKKKKKKKKK KKKKKKKKKK KKKKKKNKEE EEQKKKKKEK EEKEEEEKEE NEEKDKEKEK KKKKKEEKKK
201: KEEEE
101: NSKSYLDLGP GPTSDIVHLK SCKIHKKKKK KKKKKKKKKK KKKKKKKKKK KKKKKKNKEE EEQKKKKKEK EEKEEEEKEE NEEKDKEKEK KKKKKEEKKK
201: KEEEE
001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.