Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g00260.t01 | Wine grape | extracellular | 76.62 | 76.46 |
| PGSC0003DMT400094734 | Potato | cytosol | 16.7 | 76.19 |
| PGSC0003DMT400055769 | Potato | extracellular | 75.57 | 75.89 |
| KRH48075 | Soybean | extracellular | 75.99 | 75.52 |
| Solyc01g094970.2.1 | Tomato | extracellular | 63.67 | 74.94 |
| KRH48076 | Soybean | extracellular | 74.11 | 74.89 |
| KRH06594 | Soybean | mitochondrion | 75.99 | 74.13 |
| KRH00832 | Soybean | nucleus | 74.53 | 73.76 |
| PGSC0003DMT400000538 | Potato | extracellular | 73.07 | 73.68 |
| KRH40394 | Soybean | extracellular, nucleus | 74.11 | 73.35 |
| Solyc05g049980.2.1 | Tomato | extracellular | 74.11 | 73.05 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 45.3 | 69.55 |
| CDY65355 | Canola | extracellular | 68.48 | 69.49 |
| Bra007609.1-P | Field mustard | extracellular | 67.85 | 69.15 |
| CDY48913 | Canola | extracellular | 67.85 | 69.0 |
| GSMUA_Achr11P... | Banana | cytosol | 42.59 | 65.38 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 26.93 | 64.18 |
| GSMUA_Achr11P... | Banana | cytosol | 40.5 | 63.61 |
| GSMUA_Achr11P... | Banana | extracellular | 62.42 | 62.82 |
| Os06t0106800-01 | Rice | extracellular | 63.26 | 62.47 |
| EER89047 | Sorghum | extracellular, vacuole | 64.09 | 62.02 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 57.2 | 60.75 |
| Zm00001d035899_P001 | Maize | extracellular | 61.38 | 60.49 |
| Os03t0124900-01 | Rice | extracellular | 56.58 | 59.17 |
| Zm00001d027441_P001 | Maize | plasma membrane | 56.99 | 58.96 |
| EER95599 | Sorghum | extracellular | 56.99 | 58.96 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 59.08 | 57.87 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 57.41 | 56.58 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 69.52 | 56.54 |
| VIT_00s2630g00010.t01 | Wine grape | cytosol | 7.72 | 56.06 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 31.32 | 55.97 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 59.5 | 54.7 |
| VIT_16s0050g01120.t01 | Wine grape | cytosol | 21.29 | 54.55 |
| Zm00001d018548_P001 | Maize | cytosol | 26.3 | 54.31 |
| VIT_13s0139g00110.t01 | Wine grape | cytosol | 10.86 | 54.17 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 30.27 | 54.1 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 59.29 | 53.99 |
| Zm00001d010681_P001 | Maize | cytosol | 30.9 | 52.3 |
| VIT_07s0005g02590.t01 | Wine grape | extracellular, vacuole | 47.39 | 48.71 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 17.33 | 47.16 |
| VIT_05s0077g01760.t01 | Wine grape | extracellular, vacuole | 44.26 | 46.59 |
| VIT_02s0025g01330.t01 | Wine grape | extracellular | 43.42 | 46.53 |
| VIT_07s0005g00890.t01 | Wine grape | extracellular | 45.09 | 45.28 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 11.27 | 43.9 |
| VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 42.59 | 39.46 |
| VIT_05s0077g01740.t01 | Wine grape | nucleus | 19.42 | 39.41 |
| VIT_11s0016g00720.t01 | Wine grape | extracellular, peroxisome, plastid | 40.29 | 39.15 |
| Solyc06g030520.1.1 | Tomato | cytosol | 8.56 | 35.96 |
| PGSC0003DMT400065330 | Potato | nucleus | 13.36 | 31.22 |
| VIT_16s0050g01110.t01 | Wine grape | extracellular, golgi | 62.63 | 28.54 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 22.13 | 22.04 |
Protein Annotations
| EntrezGene:100852885 | wikigene:100852885 | Gene3D:2.160.20.10 | MapMan:50.3.2 | ProteinID:CCB62454 | ProteinID:CCB62454.1 |
| UniProt:F6I658 | EMBL:FN596755 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016798 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | EntrezGene:LOC100852885 | wikigene:LOC100852885 | PFAM:PF00295 |
| PANTHER:PTHR31339 | PANTHER:PTHR31339:SF7 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| TIGR:TC52273 | TIGR:TC56055 | UniParc:UPI0001984D3F | ArrayExpress:VIT_15s0046g02000 | EnsemblPlantsGene:VIT_15s0046g02000 | EnsemblPlants:VIT_15s0046g02000.t01 |
| unigene:Vvi.5859 | RefSeq:XP_003633958 | RefSeq:XP_003633958.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr15:+:18819117..18821528
Molecular Weight (calculated)
52034.3 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.045
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMCKSPLTT QVVSVLVAVV LLLSVSRGEC RKGRILEALE YSAISCRAHS ASLVDFGGVG DGQTLNTKAF QDAVSELSKY GSEGGAQLYV PAGKWLTGSF
101: SLTSHFTLFL HRDAVLLASQ DISQWPVIKP LPSYGRGRDA AAGRYTSLIF GTNLTDVIIT GDNGTIDGQG GLWWQRFHGG KLKYTRPYLI ELMYSADIQI
201: SNLTLLNSPS WNVHPVYSRN ILIQGITILA PVRSPNTDGI NPDSCTNTRI EDCYIVSGDD CVAVKSGWDE YGIAYGMPTK QLVIRRLTCI SPYSAVIALG
301: SEMSGGIQDV RAEDIVAINS ESGIRIKTGI GRGGYVKDIY VRGMTMKTMK WAFWMTGNYG SHADNHYDPK AFPVIQGINY RDMVAENVSM AARLEGIPSD
401: PFTGICISNV TIHLAAKAKK VPWTCTDVEG ISSGVTPTPC STLPDQGPEK TSLCNFPAES LPIDTVELQK CSYGINYYP
101: SLTSHFTLFL HRDAVLLASQ DISQWPVIKP LPSYGRGRDA AAGRYTSLIF GTNLTDVIIT GDNGTIDGQG GLWWQRFHGG KLKYTRPYLI ELMYSADIQI
201: SNLTLLNSPS WNVHPVYSRN ILIQGITILA PVRSPNTDGI NPDSCTNTRI EDCYIVSGDD CVAVKSGWDE YGIAYGMPTK QLVIRRLTCI SPYSAVIALG
301: SEMSGGIQDV RAEDIVAINS ESGIRIKTGI GRGGYVKDIY VRGMTMKTMK WAFWMTGNYG SHADNHYDPK AFPVIQGINY RDMVAENVSM AARLEGIPSD
401: PFTGICISNV TIHLAAKAKK VPWTCTDVEG ISSGVTPTPC STLPDQGPEK TSLCNFPAES LPIDTVELQK CSYGINYYP
001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.