Factsheet for PGSC0003DMT400000538

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094734	Potato	cytosol	21.68	98.1
Solyc01g094970.2.1	Tomato	extracellular	81.89	95.58
PGSC0003DMT400055769	Potato	extracellular	82.95	82.6
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	73.68	73.07
KRH48075	Soybean	extracellular	72.21	71.16
KRH40394	Soybean	extracellular, nucleus	71.37	70.04
KRH48076	Soybean	extracellular	69.47	69.62
KRH06594	Soybean	mitochondrion	71.79	69.45
KRH00832	Soybean	nucleus	70.74	69.42
CDY48913	Canola	extracellular	67.58	68.15
Bra007609.1-P	Field mustard	extracellular	67.37	68.09
CDY65355	Canola	extracellular	67.58	68.01
GSMUA_Achr4P05580_001	Banana	cytosol	43.58	66.35
PGSC0003DMT400032104	Potato	extracellular	66.53	65.42
GSMUA_Achr11P...	Banana	cytosol	40.0	60.9
GSMUA_Achr11P...	Banana	cytosol	38.95	60.66
PGSC0003DMT400024595	Potato	cytosol	59.79	59.54
GSMUA_Achr11P...	Banana	extracellular	59.58	59.45
Os06t0106800-01	Rice	extracellular	60.63	59.38
Os03t0124900-01	Rice	extracellular	57.05	59.17
EER89047	Sorghum	extracellular, vacuole	61.47	58.99
TraesCS5A01G513600.1	Wheat	extracellular	55.79	58.76
Zm00001d035899_P001	Maize	extracellular	59.79	58.44
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	24.63	58.21
EER95599	Sorghum	extracellular	56.0	57.45
Zm00001d027441_P001	Maize	plasma membrane	54.95	56.37
TraesCS7D01G016300.2	Wheat	extracellular	56.84	55.21
AT3G61490.4	Thale cress	cytosol, plastid	68.42	55.18
TraesCS4B01G344700.1	Wheat	extracellular	55.58	54.32
TraesCS7A01G019900.1	Wheat	cytosol	29.89	52.99
TraesCS7A01G019500.1	Wheat	cytosol	29.05	51.49
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	56.42	51.44
TraesCSU01G066000.1	Wheat	golgi, unclear	56.84	51.33
Zm00001d018548_P001	Maize	cytosol	25.05	51.29
Zm00001d010681_P001	Maize	cytosol	30.11	50.53
PGSC0003DMT400081328	Potato	extracellular	44.21	45.75
PGSC0003DMT400018848	Potato	extracellular	44.0	45.73
PGSC0003DMT400031687	Potato	extracellular	42.32	44.97
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.63	44.89
TraesCS7A01G019700.1	Wheat	cytosol	10.95	42.28
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	42.95	41.98
PGSC0003DMT400065330	Potato	nucleus	17.47	40.49
PGSC0003DMT400007594	Potato	extracellular	38.32	36.77
PGSC0003DMT400036866	Potato	extracellular, golgi	36.84	35.93
PGSC0003DMT400041391	Potato	cytosol	8.84	25.3
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	21.05	21.01

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0ZGW4
PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400000186	PGSC:PGSC0003DMG400000186	EnsemblPlants:PGSC0003DMT400000538	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000294A66A	SEG:seg	:	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400000186]

Coordinates

chr1:-:72550187..72553713

Molecular Weight (calculated)

51942.5 Da

IEP (calculated)

7.536

GRAVY (calculated)

-0.136

Length

475 amino acids

Sequence
(BLAST)

001: MVKTDWLLVI LLGLVFLSLE GAEGRKERIL GGSPYELAYS AINCRKHSAS IKDFGGIGDG KTLNTKAFQK AVNQLSKYAS DGGAQLIIPA GHWLTGSFNL
101: TSHFTLFLHK DAVLLASQEI NQWPVIDPLP SYGHGRDAPG GRYISLIFGT NLTDVIITGE NGTIDGQGAL WWQQFHMNKL KYTRPYLIEL MHSNKIQISN
201: LTLLNSPSWN IHPVYSSDII IQGITILAPV TSPNTDGINP DSCTNIKLED NYIVSGDDCV AVKSGWDEYG IKYGKPTSHL IIKRLTCISP YSAAIALGSE
301: MSGGIQDVRI QDITAIQTES GIRIKTGVGR GGYVKDIYVK GMKLHTMKWV FWMTGNYGSH ADTHWDPKAL PEIKGINYRD VVAENVSMAG QLDGISGDPF
401: TGICMSNVTI GLAKKSKQNP WACTNIEGIS SSVQPPPCKL LADQGPKKSG MCDFPTESLP IDSIEMQRCS YRLNL

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.