Factsheet for PGSC0003DMT400007594

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009210.1.1	Tomato	nucleus	98.99	98.99
PGSC0003DMT400041391	Potato	cytosol	26.67	79.52
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	77.37	77.69
KRH19342	Soybean	endoplasmic reticulum	76.36	76.99
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	76.16	76.63
GSMUA_Achr5P22120_001	Banana	extracellular	73.74	74.19
GSMUA_Achr9P18190_001	Banana	mitochondrion	73.54	74.13
GSMUA_Achr3P10280_001	Banana	mitochondrion	71.31	73.7
KRH12568	Soybean	plastid	70.3	71.17
KRH37525	Soybean	extracellular, plasma membrane	70.1	70.24
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	71.31	69.76
Os02t0781000-01	Rice	extracellular	39.8	69.12
CDX83782	Canola	extracellular, golgi, plastid	70.51	68.84
PGSC0003DMT400036866	Potato	extracellular, golgi	67.68	68.79
CDX96676	Canola	extracellular, golgi, plastid	70.3	68.64
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	70.1	68.44
EES05901	Sorghum	extracellular, golgi	67.07	66.4
Zm00001d052103_P001	Maize	plasma membrane	66.06	66.06
GSMUA_Achr11P...	Banana	mitochondrion	65.45	65.99
TraesCS6B01G371200.2	Wheat	mitochondrion	65.66	65.66
TraesCS6A01G340000.1	Wheat	mitochondrion	65.05	65.05
TraesCS6D01G320600.1	Wheat	mitochondrion	65.05	65.05
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	64.85	64.33
PGSC0003DMT400031687	Potato	extracellular	41.41	45.86
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	41.01	41.77
PGSC0003DMT400024595	Potato	cytosol	38.18	39.62
PGSC0003DMT400055769	Potato	extracellular	37.58	38.99
PGSC0003DMT400032104	Potato	extracellular	37.98	38.92
PGSC0003DMT400081328	Potato	extracellular	35.76	38.56
PGSC0003DMT400018848	Potato	extracellular	35.56	38.51
PGSC0003DMT400000538	Potato	extracellular	36.77	38.32
PGSC0003DMT400094734	Potato	cytosol	6.67	31.43
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	21.01	21.85
PGSC0003DMT400065330	Potato	nucleus	5.86	14.15

Protein Annotations

EntrezGene:102580373	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0ZT93	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400002931	PGSC:PGSC0003DMG400002931
EnsemblPlants:PGSC0003DMT400007594	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0002966227	RefSeq:XP_006345257.1	SEG:seg

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400002931]

Coordinates

chr12:-:3186044..3193049

Molecular Weight (calculated)

55475.6 Da

IEP (calculated)

9.135

GRAVY (calculated)

-0.145

Length

495 amino acids

Sequence
(BLAST)

001: MVETVTSSFW WRWTQPHHHP RRWVPSVFTT HKAIVTAVWI AFLVTVFWWQ VDATAGILIF RRVFPAKEVP KFRPVAFNLT DFGGVGDGVT VNTEAFEKAI
101: LAIAKLGKKG GGQLNVPPGY WLTAPFNLTS HMTLFLAEGA VILGIDDEKY WPLMPPLPSY GYGREHRGPR YGSLIHGQKL KDVIITGHNG TINGQGQAWW
201: KKFRQKLLNH TRGPLVQIMW STDILISNIT LQDSPFWTLH PYDCKNVTIR NVTILAPIAG APNTDGIDPD SCEDVLIENC YISVGDDGIA IKSGWDQYGI
301: AYGRPSKNIL IRNLVIRSNV SAGVSIGSEM SGGVSNVTVE NLFIWNSRRG VRIKTAPGRG GYVRDITYKN LTFENVRVGI VIKTDYNEHA DESFDPKAVP
401: LLENISYTTI HGEGVRVPVQ IHGSKEIWVR NVTFRDMSVG LTYKKKHIFQ CAYVQGRVIG TIFPAPCKNL DLYDEQGHLI RRSDAQNATD IDYDI

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.