CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, extracellular

Predictor Summary:

plastid 3
extracellular 1
plasma membrane 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19342	Soybean	endoplasmic reticulum	96.54	96.74
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	81.71	81.54
KRH12568	Soybean	plastid	77.85	78.32
KRH37525	Soybean	extracellular, plasma membrane	78.25	77.94
PGSC0003DMT400007594	Potato	extracellular	76.63	76.16
Solyc07g042160.2.1	Tomato	nucleus	76.22	75.91
Solyc12g009210.1.1	Tomato	nucleus	76.22	75.76
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	75.81	73.72
GSMUA_Achr5P22120_001	Banana	extracellular	73.58	73.58
GSMUA_Achr9P18190_001	Banana	mitochondrion	73.37	73.52
GSMUA_Achr3P10280_001	Banana	mitochondrion	71.34	73.28
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	75.0	72.78
CDX96676	Canola	extracellular, golgi, plastid	75.0	72.78
CDX83782	Canola	extracellular, golgi, plastid	75.0	72.78
Os02t0781000-01	Rice	extracellular	40.65	70.18
TraesCS6B01G371200.2	Wheat	mitochondrion	69.72	69.29
TraesCS6A01G340000.1	Wheat	mitochondrion	69.51	69.09
TraesCS6D01G320600.1	Wheat	mitochondrion	69.51	69.09
EES05901	Sorghum	extracellular, golgi	68.5	67.4
Zm00001d052103_P001	Maize	plasma membrane	67.07	66.67
GSMUA_Achr11P...	Banana	mitochondrion	65.04	65.17
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	63.41	62.53
KRH55874	Soybean	cytosol	8.33	62.12
KRG99037	Soybean	nucleus	40.65	45.25
KRH45957	Soybean	extracellular	40.45	44.92
KRH33649	Soybean	nucleus	42.28	44.83
KRH68340	Soybean	nucleus	42.48	44.66
KRH69147	Soybean	nucleus	42.07	44.61
KRH73576	Soybean	extracellular	25.0	44.57
KRG96607	Soybean	extracellular	42.28	44.44
KRH14547	Soybean	extracellular	39.84	43.95
KRH35239	Soybean	extracellular, plasma membrane, plastid	42.28	43.33
KRH35240	Soybean	extracellular	41.46	43.31
KRH35238	Soybean	extracellular	40.65	42.92
KRH08861	Soybean	extracellular	41.06	42.35
KRH38380	Soybean	extracellular	40.65	42.02
KRG91587	Soybean	cytosol, extracellular, plastid	20.73	41.8
KRH48075	Soybean	extracellular	40.65	41.49
KRH53903	Soybean	extracellular, plasma membrane, plastid	39.84	41.09
KRH59960	Soybean	nucleus	40.85	40.85
KRH40394	Soybean	extracellular, nucleus	40.04	40.7
KRH00832	Soybean	nucleus	40.04	40.7
KRH41230	Soybean	nucleus	40.65	40.49
KRH50791	Soybean	extracellular	36.79	40.31
KRH48076	Soybean	extracellular	38.82	40.3
KRH37050	Soybean	extracellular, vacuole	36.79	40.04
KRH06594	Soybean	mitochondrion	39.84	39.92
KRH02302	Soybean	extracellular	36.38	39.87
KRH12027	Soybean	extracellular, vacuole	37.6	39.28
KRH69264	Soybean	extracellular	36.18	39.12
KRG96478	Soybean	endoplasmic reticulum, extracellular	38.01	38.8
KRH31843	Soybean	extracellular	35.57	38.38
KRH68221	Soybean	extracellular	38.21	37.83
KRH33610	Soybean	plastid	9.35	25.56
KRG95330	Soybean	extracellular, plasma membrane, vacuole	22.97	24.25

Protein Annotations

EntrezGene:100818529	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:ACUP02010312	EnsemblPlantsGene:GLYMA_17G047800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:I1MS92	InterPro:IPR012334	EnsemblPlants:KRH02590
ProteinID:KRH02590	ProteinID:KRH02590.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000233E53F

Description

hypothetical protein

Coordinates

chr17:-:3621562..3630290

Molecular Weight (calculated)

54989.3 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.153

Length

492 amino acids

Sequence
(BLAST)

001: MMVETSTLGH FHHQRLDLRR WVPAFFTSHK TLLTLLWIAA FASVFLWQRN IVGGFLVYGG IPGRPMPMLR PMAFNLTDFG GVGDGVTLNT EAFERAVSAV
101: SKFGKKGGAQ LNVPPGRWLT APFNLTSHMT LFLAEDAVIL GIDDEKYWPL MPPLPSYGYG REHPGPRYGS LIHGQHLKDV VITGHNGTIN GQGQSWWKKY
201: RQKRLNHTRG PLVQIMFSSD IVITNITLRD SPFWTIHPYD CKNITIKGVT ILAPVFGAPN TDGIDPDSCE DMLIEDCYIS VGDDAIAVKS GWDQYGIDYG
301: RPSMNIMIRN LVVRSMVSAG ISIGSEMSGG VSNVTVENLL IWDSRRGVRI KTAPGRGAYV RQITYRNITF ENVRVGIVMK TDYNEHPDDG YDPLALPILR
401: DISFTTVHGQ GVRVPVRIHG SEEIPVRNVT FKDMSVGLTY KKKHIFQCAF VQGRVIGTIY PAPCENLDRY NEQGQLVKHS ASQNVTDIDY DF

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.