Factsheet for GSMUA_Achr9P18190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P10280_001	Banana	mitochondrion	88.19	90.4
GSMUA_Achr5P22120_001	Banana	extracellular	87.58	87.4
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	74.54	74.24
KRH19342	Soybean	endoplasmic reticulum	74.13	74.13
PGSC0003DMT400007594	Potato	extracellular	74.13	73.54
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	73.52	73.37
Solyc07g042160.2.1	Tomato	nucleus	73.52	73.08
Solyc12g009210.1.1	Tomato	nucleus	73.52	72.93
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	73.12	70.95
AT3G42950.1	Thale cress	extracellular, golgi	69.86	70.87
KRH12568	Soybean	plastid	70.06	70.35
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	71.69	69.43
CDY27797	Canola	extracellular, mitochondrion, plastid	70.67	69.26
CDX96676	Canola	extracellular, golgi, plastid	71.49	69.23
CDX83782	Canola	extracellular, golgi, plastid	71.28	69.03
KRH37525	Soybean	extracellular, plasma membrane	69.45	69.03
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	70.47	68.92
GSMUA_Achr11P...	Banana	mitochondrion	68.84	68.84
CDY41934	Canola	extracellular, mitochondrion, plastid	70.26	68.73
PGSC0003DMT400036866	Potato	extracellular, golgi	67.62	68.17
Solyc03g117750.2.1	Tomato	extracellular, golgi	67.41	67.97
CDY53228	Canola	extracellular	15.48	67.86
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	68.64	67.54
KRH55874	Soybean	cytosol	7.94	59.09
GSMUA_Achr6P14280_001	Banana	cytosol	39.92	48.76
GSMUA_Achr8P19900_001	Banana	cytosol	40.94	48.43
GSMUA_Achr4P08470_001	Banana	extracellular	40.12	47.93
GSMUA_Achr10P...	Banana	cytosol	39.71	47.33
GSMUA_AchrUn_...	Banana	extracellular	37.47	46.82
GSMUA_Achr8P06180_001	Banana	extracellular	36.66	45.8
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	37.68	45.57
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	15.89	44.32
GSMUA_Achr4P05580_001	Banana	cytosol	27.49	43.27
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	36.25	42.18
GSMUA_Achr11P...	Banana	cytosol	26.48	41.67
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	37.47	41.63
GSMUA_Achr11P...	Banana	extracellular	39.51	40.76
GSMUA_Achr11P...	Banana	cytosol	25.25	40.66
GSMUA_Achr11P...	Banana	extracellular, vacuole	34.42	37.98
GSMUA_Achr11P...	Banana	extracellular	36.66	32.79
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	12.63	30.85
GSMUA_Achr11P...	Banana	cytosol	36.46	27.04
GSMUA_Achr3P11090_001	Banana	extracellular	21.79	23.06

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr9G18190_001
EnsemblPlants:GSMUA_Achr9P18190_001	EnsemblPlants:GSMUA_Achr9T18190_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0U1C6	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000295ED35	SEG:seg	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr9G18190_001]

Coordinates

chr9:-:12765414..12769996

Molecular Weight (calculated)

54458.4 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.090

Length

491 amino acids

Sequence
(BLAST)

001: MVEIFSSRWR LPLQHHPRWL VGLLTTHRTL VLVLWIVGFA LVFGWQLSSM DGVAFFRRGP VARPVPRLRP VAYNLTDFGG VGDGKTLNTE AFERAVEAIS
101: TLGARGGGQL NVPPGFWLTA PFNLTSHMTL FLAEGAVILG IEDESYWQLM PPLPSYGYGR EHKGPRYGSL IHGQNLKDIV ITGHNGTING QGQVWWTKYK
201: KRILNYTRGP LVQLMWSKDI VISNITLRDS PFWTLHPYDC KNVTISHVTI LAPVSGAPNT DGIDPDSCED VLIENCYICV GDDAVAIKSG WDQYGIAYGR
301: PSANITLRNL TVQSVVSAGI SIGSEMSGGV SNITVENLIV WESRRGIRIK TAPGRGGYVR NIFYRNVTLD NVRVGIVIKT DYNEHPDEGF DPAAVPIIKN
401: ITYSGIHGQG VRVPVRIDGS EEIPVKDVSF QDMSVGLSYK KKHIFQCSFV EGRVIGSIFP APCENLDLYD EQGRLVKRSL SQNNTDIDYD I

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.