Factsheet for GSMUA_Achr4P08470_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 2
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	74.7	75.62
Os01t0618900-01	Rice	cytosol, extracellular	60.34	75.38
GSMUA_Achr10P...	Banana	cytosol	70.07	69.9
GSMUA_Achr6P14280_001	Banana	cytosol	67.88	69.4
GSMUA_Achr8P19900_001	Banana	cytosol	69.83	69.16
Os05t0587000-01	Rice	extracellular	72.75	66.74
TraesCS3B01G253000.1	Wheat	extracellular	72.51	66.22
EES01085	Sorghum	extracellular	72.02	66.22
TraesCS3D01G230000.1	Wheat	extracellular	71.78	65.56
EES20030	Sorghum	extracellular	69.83	65.38
KRH73576	Soybean	extracellular	43.55	64.86
KRH45957	Soybean	extracellular	68.61	63.66
KRG99037	Soybean	nucleus	68.13	63.35
Zm00001d011369_P001	Maize	extracellular	68.13	62.92
CDY47619	Canola	extracellular, vacuole	67.88	62.84
VIT_02s0025g01330.t01	Wine grape	extracellular	68.13	62.64
CDY03516	Canola	extracellular, vacuole	67.64	62.61
Bra013734.1-P	Field mustard	extracellular, vacuole	67.64	62.61
KRH14547	Soybean	extracellular	67.88	62.56
AT4G23820.1	Thale cress	extracellular, vacuole	67.4	62.39
PGSC0003DMT400031687	Potato	extracellular	66.91	61.52
Zm00001d009717_P001	Maize	extracellular	66.42	61.21
CDY10970	Canola	extracellular, vacuole	66.18	60.31
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	25.79	60.23
CDX94222	Canola	extracellular	65.94	60.09
Bra019264.1-P	Field mustard	extracellular, vacuole	65.69	59.87
Solyc08g082170.2.1	Tomato	nucleus	67.15	59.1
AT5G41870.1	Thale cress	extracellular	62.77	57.46
Bra028511.1-P	Field mustard	extracellular	62.29	57.27
CDX67513	Canola	extracellular	62.29	57.27
CDY13383	Canola	extracellular	61.07	56.4
HORVU3Hr1G054810.4	Barley	extracellular	72.02	54.71
GSMUA_Achr8P06180_001	Banana	extracellular	50.37	52.67
GSMUA_AchrUn_...	Banana	extracellular	48.18	50.38
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	48.66	47.39
GSMUA_Achr4P05580_001	Banana	cytosol	35.77	47.12
GSMUA_Achr11P...	Banana	cytosol	33.82	44.55
GSMUA_Achr11P...	Banana	cytosol	32.6	43.93
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	46.96	43.67
GSMUA_Achr11P...	Banana	extracellular	48.42	41.81
GSMUA_Achr3P10280_001	Banana	mitochondrion	47.45	40.71
GSMUA_Achr11P...	Banana	extracellular, vacuole	44.04	40.67
GSMUA_Achr11P...	Banana	mitochondrion	48.18	40.33
GSMUA_Achr9P18190_001	Banana	mitochondrion	47.93	40.12
GSMUA_Achr5P22120_001	Banana	extracellular	47.45	39.63
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	46.47	38.28
GSMUA_Achr11P...	Banana	extracellular	50.61	37.89
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	16.3	33.33
GSMUA_Achr11P...	Banana	cytosol	46.72	29.0
GSMUA_Achr3P11090_001	Banana	extracellular	23.84	21.12

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr4G08470_001	EnsemblPlants:GSMUA_Achr4P08470_001	EnsemblPlants:GSMUA_Achr4T08470_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SM64	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000295752F

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr4G08470_001]

Coordinates

chr4:-:6216589..6221444

Molecular Weight (calculated)

44304.7 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.072

Length

411 amino acids

Sequence
(BLAST)

001: MKNRGEVVSI TDFGGVGDGR TLNTAAFKSA VFHIEQRKVP EGSLLYIPAG VWLTEAFNLT SHMTLFLAEG AVIKATQDTV NWPLIHPLPS YGRGRELPGG
101: RYMSLIHGNG LQDVTITGEN GTIDGQGDVW WNMWRQKTLP FTRPNLLELM HSTDIIISNV VFRDSPFWNI HPVYCSNVVV KNVTILAPYD SPNTDGVDPD
201: SSLNVCIEDC YISTGDDLVA VKSGWDEYGI AYARPSSGII VRRLTGSSPF AGFAVGSETS GGIENILAEN LNIFKTGVGI HIKTNSGRGG FIKNITISDV
301: NLSNVRKGLR IAGNVGDHPD DRYDPNALPV VDGLTIKNVW GVRIQQPGSI QGIKNSPFTQ IHLSNVKLDV ASPRGVAWAC ADVSGGALDV QPSPCAELTI
401: TNGMSFRSGA L

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.