Factsheet for TraesCS3D01G230000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G253000.1	Wheat	extracellular	96.67	96.67
Os01t0618900-01	Rice	cytosol, extracellular	64.0	87.54
EES01085	Sorghum	extracellular	83.56	84.12
Zm00001d011369_P001	Maize	extracellular	79.56	80.45
HORVU3Hr1G054810.4	Barley	extracellular	92.0	76.53
GSMUA_Achr4P08470_001	Banana	extracellular	65.56	71.78
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	59.56	66.01
PGSC0003DMT400031687	Potato	extracellular	62.89	63.31
VIT_02s0025g01330.t01	Wine grape	extracellular	62.22	62.64
KRG99037	Soybean	nucleus	61.11	62.22
KRH45957	Soybean	extracellular	61.11	62.08
AT4G23820.1	Thale cress	extracellular, vacuole	61.11	61.94
CDY47619	Canola	extracellular, vacuole	60.89	61.71
Bra013734.1-P	Field mustard	extracellular, vacuole	60.67	61.49
CDY03516	Canola	extracellular, vacuole	60.44	61.26
KRH14547	Soybean	extracellular	60.67	61.21
KRH73576	Soybean	extracellular	37.33	60.87
CDY10970	Canola	extracellular, vacuole	60.67	60.53
CDX94222	Canola	extracellular	60.44	60.31
Bra019264.1-P	Field mustard	extracellular, vacuole	60.44	60.31
Solyc08g082170.2.1	Tomato	nucleus	62.44	60.17
CDX67513	Canola	extracellular	57.56	57.94
Bra028511.1-P	Field mustard	extracellular	57.56	57.94
CDY13383	Canola	extracellular	57.11	57.75
AT5G41870.1	Thale cress	extracellular	57.33	57.46
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	44.22	43.54
TraesCS7D01G320900.1	Wheat	plastid	46.67	43.3
TraesCS5D01G102900.1	Wheat	unclear	43.11	43.21
TraesCS7D01G016300.2	Wheat	extracellular	44.0	40.49
TraesCS5D01G513600.1	Wheat	plastid	47.56	40.3
TraesCS6D01G320600.1	Wheat	mitochondrion	43.11	39.19
TraesCS5D01G219200.1	Wheat	plastid	45.56	38.61
TraesCS3D01G387300.1	Wheat	unclear	22.67	22.47
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	22.67	22.32

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF16	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3D01G230000	EnsemblPlants:TraesCS3D01G230000.1	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:313310624..313313581

Molecular Weight (calculated)

47630.8 Da

IEP (calculated)

7.687

GRAVY (calculated)

0.034

Length

450 amino acids

Sequence
(BLAST)

001: MLYVAPRWRC LLAVAMAIAA VLSAAGGAGA QETCSGAVPP PPKRGAWMSI ASFGGAGDGR TLNTAAFAAA VASIQRRRAR GGALLYVPPG VWLTGPFSLT
101: SHMTLFLACG AVIRATQDTS SWPLIDPLPS YGRGRELPGK RYISLIHGNG LQDVFITGEN GTIDGQGSVW WDMWKKGTLP FTRPHLLELM DSSNAIVSNL
201: VFQDSPFWNI HPVYCSNVLI RNLTILAPHD SPNTDGIDPD SSSNVCIEDC NISTGDDLIA IKSGWDEYGI ACGRPSSGIT IRRITGSSPF AGFSVGSETS
301: GGVENVLAEH LNFYSSGFGV HIKTNSGRGG FIRNITVSDV VLDNVRYGLR IAGDVGGHPD ERYNHSALPI VDSLTIKNVQ GQNIKEAGLI KGIPNSAFSR
401: ICLSNIKLHG SAPVRPWKCA AVSGAALDVQ PSPCTELTST SGMSFCTNSL

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.