Factsheet for TraesCS3D01G387300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G393600.1	Wheat	extracellular	97.36	97.36
HORVU3Hr1G088950.1	Barley	extracellular	93.39	93.39
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	87.22	86.65
Os09t0487600-01	Rice	extracellular	85.24	84.68
EER99085	Sorghum	extracellular, plasma membrane	83.26	81.82
Zm00001d020931_P001	Maize	extracellular	83.04	81.08
GSMUA_Achr3P11090_001	Banana	extracellular	70.48	68.97
Solyc03g051770.2.1	Tomato	cytosol	43.39	62.54
KRG95330	Soybean	extracellular, plasma membrane, vacuole	62.56	60.94
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	61.67	58.21
CDY02392	Canola	extracellular, plasma membrane, vacuole	60.35	57.32
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.35	57.32
CDY12962	Canola	extracellular, plasma membrane, vacuole	60.13	57.11
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.35	55.92
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	57.71	55.04
TraesCS6D01G320600.1	Wheat	mitochondrion	26.21	24.04
TraesCS7D01G320900.1	Wheat	plastid	24.89	23.3
TraesCS5D01G219200.1	Wheat	plastid	26.87	22.98
TraesCS3D01G230000.1	Wheat	extracellular	22.47	22.67
TraesCS5D01G102900.1	Wheat	unclear	21.81	22.05
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	21.37	21.23
TraesCS7D01G016300.2	Wheat	extracellular	21.15	19.63
TraesCS5D01G513600.1	Wheat	plastid	22.91	19.59

Protein Annotations

EnsemblPlants:TraesCS3D01G387300.1	EnsemblPlantsGene:TraesCS3D01G387300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr3D:+:502125587..502127162

Molecular Weight (calculated)

49969.3 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.232

Length

454 amino acids

Sequence
(BLAST)

001: MAASHLLLLL LLLAPVADSA PTRVFSVTDY GAAGDGFRYD TAAIQAAVNA CGEAGGGRVL LPAPGDYLTA TVHLRSRVVL EVAPGARLLG GTRQRDYPAE
101: RRRWYVVLAE NTTGAGVTGG GEINGQGGAF VVTPSDQKNV MVSWNATGHC RGDECRPRLV GFVDSKDVTI HDITLNQPAY WCLHLVRCDH SVIRNVSIYG
201: DFDTPNNDGI DIEGSNNTII TNCSIDTGDD AICPKSLTGP VHNLTVTNCR IRTKSSAIKF GSASNFNFER LLFDNITIVD SHRGLGMQIR DGGNVSNVVF
301: SNIKMRTRYY HPSWWGRAEP IYITTCPRHP GSKEGTISDV SFINISSVSE NGVFLAGSRH SLLRNLKFKN VDLTYRRWTN YTGGLYDYRP GCQELVKHKT
401: GGMMLEQISG LEIDNVRMRW SRGSLQGWDV NPLLFRPSTI DRLSFHDWQS LNVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.