Factsheet for GSMUA_Achr3P11090_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
plasma membrane 5
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G393600.1	Wheat	extracellular	69.4	70.93
TraesCS3D01G387300.1	Wheat	unclear	68.97	70.48
TraesCS5A01G264400.2	Wheat	unclear	69.4	70.46
Os09t0487600-01	Rice	extracellular	69.18	70.24
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	68.32	69.37
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	68.75	68.75
HORVU3Hr1G088950.1	Barley	extracellular	67.24	68.72
EER99085	Sorghum	extracellular, plasma membrane	68.1	68.4
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	68.1	68.4
Zm00001d020931_P001	Maize	extracellular	68.1	67.96
Solyc03g051770.2.1	Tomato	cytosol	46.12	67.94
KRG95330	Soybean	extracellular, plasma membrane, vacuole	61.85	61.59
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	60.99	59.45
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	60.78	58.63
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.7	57.95
CDY02392	Canola	extracellular, plasma membrane, vacuole	59.7	57.95
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.78	57.55
CDY12962	Canola	extracellular, plasma membrane, vacuole	59.27	57.53
GSMUA_Achr8P19900_001	Banana	cytosol	21.77	24.34
GSMUA_Achr10P...	Banana	cytosol	21.55	24.27
GSMUA_Achr3P10280_001	Banana	mitochondrion	25.0	24.22
GSMUA_Achr4P08470_001	Banana	extracellular	21.12	23.84
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	21.55	23.7
GSMUA_Achr6P14280_001	Banana	cytosol	20.47	23.63
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	8.84	23.3
GSMUA_Achr11P...	Banana	mitochondrion	24.14	22.81
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	19.83	22.66
GSMUA_AchrUn_...	Banana	extracellular	19.18	22.65
GSMUA_Achr8P06180_001	Banana	extracellular	19.18	22.65
GSMUA_Achr9P18190_001	Banana	mitochondrion	23.06	21.79
GSMUA_Achr5P22120_001	Banana	extracellular	22.63	21.34
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	22.63	21.04
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	19.61	20.59
GSMUA_Achr11P...	Banana	extracellular	20.91	20.38
GSMUA_Achr11P...	Banana	extracellular, vacuole	19.18	20.0
GSMUA_Achr11P...	Banana	cytosol	13.36	19.87
GSMUA_Achr11P...	Banana	cytosol	12.72	19.34
GSMUA_Achr4P05580_001	Banana	cytosol	12.93	19.23
GSMUA_Achr11P...	Banana	extracellular	21.98	18.58
GSMUA_Achr11P...	Banana	cytosol	23.49	16.47
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	6.25	14.43

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr3G11090_001	EnsemblPlants:GSMUA_Achr3P11090_001	EnsemblPlants:GSMUA_Achr3T11090_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SDM6	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI0002952AE8	SEG:seg	:	:	:	:

Description

polygalacturonase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G11090_001]

Coordinates

chr3:+:8235742..8237777

Molecular Weight (calculated)

51190.9 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.163

Length

464 amino acids

Sequence
(BLAST)

001: MRWFPPKYPT ILSPMWTPLL LLLLYFAAAD HGGATIISVT DHGAVGDGRC YDTVAIQAAI DACAGAGGGR VRFPAGGDYL TATVWLRTGV VLEVEAGARI
101: LGGRRQCDYP ADPARWYVVV AEGVQRVGIT GGGEINGQGE AFVVRRDPRK NVMVSWNATG SCRGDECRPR LVGFIDSVDV VVSDVTLNQT AYWCLHLVRC
201: DHTFIRNVSI YGDFDSPNND GIDIEDSNNT FITNCHIDTG DDAICPKSST GPVHNLIVTD CWIRTKSSAI KLGSASWFDF RRLLFHNITI VDSHRGLAMQ
301: IRDGGNVSDV VFSNIRISTK YYDPSWWGRA EPIYITTCPR DPGSKTGSIS DVLFMNISAV SENGVFLSGS PGGLISNLKF KDINLTYKRR TKYPSNLYDY
401: RPGCRGMVKH QTAGMTLEHI SGLEMENVKM RWHRSNVKGW NNPLSITPST VNKLSFKEWA SEIC

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.