Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 5
- plastid 1
- plasma membrane 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 85.1 | 87.24 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 85.1 | 87.24 |
| Bra035299.1-P | Field mustard | extracellular, plasma membrane, vacuole | 85.1 | 87.24 |
| Solyc03g051770.2.1 | Tomato | cytosol | 45.1 | 70.16 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 63.06 | 66.31 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 62.86 | 64.03 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 60.82 | 62.6 |
| Os09t0487600-01 | Rice | extracellular | 58.37 | 62.58 |
| EER99085 | Sorghum | extracellular, plasma membrane | 58.16 | 61.69 |
| Zm00001d020931_P001 | Maize | extracellular | 57.76 | 60.86 |
| TraesCS5D01G271900.1 | Wheat | extracellular, plasma membrane, vacuole | 56.73 | 60.83 |
| GSMUA_Achr3P11090_001 | Banana | extracellular | 57.55 | 60.78 |
| TraesCS3D01G387300.1 | Wheat | unclear | 55.92 | 60.35 |
| TraesCS3A01G393600.1 | Wheat | extracellular | 55.92 | 60.35 |
| TraesCS5A01G264400.2 | Wheat | unclear | 56.12 | 60.18 |
| HORVU3Hr1G088950.1 | Barley | extracellular | 55.1 | 59.47 |
| HORVU5Hr1G073070.1 | Barley | extracellular, plasma membrane, vacuole | 55.71 | 58.84 |
| TraesCS5B01G263700.2 | Wheat | extracellular, plasma membrane | 55.1 | 58.44 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 22.04 | 24.32 |
| AT5G41870.1 | Thale cress | extracellular | 22.24 | 24.28 |
| AT3G62110.1 | Thale cress | vacuole | 22.65 | 23.57 |
| AT3G48950.1 | Thale cress | extracellular | 22.45 | 23.45 |
| AT2G23900.1 | Thale cress | extracellular | 22.65 | 23.27 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 22.45 | 22.22 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 21.84 | 22.11 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 20.2 | 22.05 |
| AT4G33440.1 | Thale cress | extracellular | 21.22 | 21.89 |
| AT3G06770.5 | Thale cress | extracellular | 19.59 | 21.48 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 21.84 | 21.15 |
| AT3G16850.1 | Thale cress | vacuole | 18.78 | 20.22 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 21.43 | 17.83 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:824949 | UniProt:A0A178V9R2 | ProteinID:AEE79701.1 | ProteinID:ANM65784.1 |
| ArrayExpress:AT3G57790 | EnsemblPlantsGene:AT3G57790 | RefSeq:AT3G57790 | TAIR:AT3G57790 | RefSeq:AT3G57790-TAIR-G | EnsemblPlants:AT3G57790.1 |
| TAIR:AT3G57790.1 | Unigene:At.28595 | UniProt:F4J3I0 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001327729.1 | RefSeq:NP_567055.1 | ProteinID:OAP02859.1 |
| PFAM:PF00295 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF10 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI000016372B | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
Coordinates
chr3:-:21405283..21407624
Molecular Weight (calculated)
54101.4 Da
IEP (calculated)
4.582
GRAVY (calculated)
-0.112
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.