Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08036 | Canola | cytosol, nucleus, vacuole | 70.69 | 83.82 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 71.14 | 83.68 |
| Bra001215.1-P | Field mustard | extracellular | 83.22 | 82.85 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 74.72 | 74.39 |
| KRH02302 | Soybean | extracellular | 62.86 | 62.58 |
| KRH50791 | Soybean | extracellular | 62.64 | 62.36 |
| VIT_05s0077g01760.t01 | Wine grape | extracellular, vacuole | 63.09 | 61.98 |
| KRH37050 | Soybean | extracellular, vacuole | 62.42 | 61.73 |
| AT3G16850.1 | Thale cress | vacuole | 61.3 | 60.22 |
| KRH12027 | Soybean | extracellular, vacuole | 62.19 | 59.02 |
| PGSC0003DMT400081328 | Potato | extracellular | 57.27 | 55.77 |
| GSMUA_Achr5P00100_001 | Banana | cytosol, extracellular, plastid | 52.57 | 55.69 |
| PGSC0003DMT400018848 | Potato | extracellular | 56.38 | 55.14 |
| Os11t0658800-01 | Rice | extracellular | 55.03 | 54.79 |
| Solyc06g009790.2.1 | Tomato | extracellular | 55.26 | 54.05 |
| VIT_05s0077g01740.t01 | Wine grape | nucleus | 28.41 | 53.81 |
| Solyc09g075460.2.1 | Tomato | extracellular | 57.27 | 53.33 |
| Os12t0554800-01 | Rice | cytosol, extracellular | 50.34 | 53.07 |
| TraesCS4D01G146700.1 | Wheat | extracellular, golgi, vacuole | 54.14 | 52.95 |
| KXG29050 | Sorghum | extracellular | 53.24 | 52.77 |
| TraesCS4A01G168800.1 | Wheat | extracellular, golgi, vacuole | 53.91 | 52.74 |
| TraesCS4B01G144700.2 | Wheat | extracellular, golgi, vacuole | 53.69 | 52.52 |
| TraesCS5B01G097100.2 | Wheat | extracellular | 51.9 | 51.67 |
| Zm00001d023813_P001 | Maize | extracellular, vacuole | 53.24 | 51.63 |
| TraesCS5D01G102900.1 | Wheat | unclear | 51.45 | 51.22 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 49.22 | 49.44 |
| TraesCS5A01G090800.2 | Wheat | extracellular, golgi, mitochondrion, plastid | 51.68 | 48.73 |
| Zm00001d048696_P001 | Maize | extracellular | 52.13 | 47.17 |
| HORVU5Hr1G023800.7 | Barley | plastid | 53.24 | 46.39 |
| AT3G62110.1 | Thale cress | vacuole | 47.2 | 44.8 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 43.18 | 43.47 |
| GSMUA_Achr11P... | Banana | extracellular | 53.24 | 43.35 |
| AT5G41870.1 | Thale cress | extracellular | 43.18 | 42.98 |
| AT4G33440.1 | Thale cress | extracellular | 41.16 | 38.74 |
| AT3G48950.1 | Thale cress | extracellular | 39.82 | 37.95 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 41.83 | 37.78 |
| GSMUA_Achr11P... | Banana | cytosol | 52.35 | 35.35 |
| AT2G23900.1 | Thale cress | extracellular | 37.14 | 34.8 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 36.24 | 33.47 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 36.24 | 32.02 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 40.72 | 30.9 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 21.48 | 19.59 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:819862 | UniProt:A0A1I9LN94 | ProteinID:AAF63821.1 | ProteinID:AEE74454.1 |
| ProteinID:AEE74455.1 | ProteinID:ANM64052.1 | ArrayExpress:AT3G06770 | EnsemblPlantsGene:AT3G06770 | RefSeq:AT3G06770 | TAIR:AT3G06770 |
| RefSeq:AT3G06770-TAIR-G | EnsemblPlants:AT3G06770.5 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| RefSeq:NP_001326103.1 | RefSeq:NP_566292.1 | RefSeq:NP_850526.1 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF15 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI00084940BA | SEG:seg | : | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN94]
Coordinates
chr3:-:2134800..2137085
Molecular Weight (calculated)
48255.1 Da
IEP (calculated)
6.720
GRAVY (calculated)
0.006
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQVVTILIL ALTSVIPIYA NVHGAGKICD ELGRRSLSTR PHSVSITDFG AVGDGKTLNT LAFQNAVFYL MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT
101: LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN
201: APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR PTENVHIRNV YLRGASGSSI SFGSEMSGGI
301: SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH IRLSNISGEN IGIAGKLFGI KESPFSSVTL
401: SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV
101: LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN
201: APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR PTENVHIRNV YLRGASGSSI SFGSEMSGGI
301: SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH IRLSNISGEN IGIAGKLFGI KESPFSSVTL
401: SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.