Factsheet for TraesCS5A01G090800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, extracellular

Predictor Summary:

mitochondrion 3
extracellular 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G102900.1	Wheat	unclear	93.25	98.44
TraesCS5B01G097100.2	Wheat	extracellular	91.56	96.66
Os12t0554800-01	Rice	cytosol, extracellular	75.95	84.91
HORVU5Hr1G023800.7	Barley	plastid	90.72	83.82
Zm00001d023813_P001	Maize	extracellular, vacuole	72.15	74.19
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	69.41	71.99
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	59.49	66.82
GSMUA_Achr11P...	Banana	extracellular, vacuole	55.49	59.1
KRH37050	Soybean	extracellular, vacuole	55.27	57.96
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	54.85	57.14
VIT_07s0005g00890.t01	Wine grape	extracellular	56.75	56.39
KRH12027	Soybean	extracellular, vacuole	55.7	56.05
PGSC0003DMT400018848	Potato	extracellular	54.01	56.02
KRH02302	Soybean	extracellular	52.95	55.9
Solyc06g009790.2.1	Tomato	extracellular	53.8	55.8
CDY33922	Canola	extracellular	52.11	55.63
KRH50791	Soybean	extracellular	52.53	55.46
Bra037429.1-P	Field mustard	extracellular	51.48	54.95
PGSC0003DMT400081328	Potato	extracellular	53.16	54.9
AT3G16850.1	Thale cress	vacuole	52.53	54.73
CDX74085	Canola	cytoskeleton, cytosol, vacuole	43.46	54.21
AT5G49215.1	Thale cress	extracellular, vacuole	51.27	54.12
Bra022182.1-P	Field mustard	extracellular, golgi	51.48	53.86
CDY08036	Canola	cytosol, nucleus, vacuole	42.83	53.85
KRH31843	Soybean	extracellular	51.69	53.73
KRH69264	Soybean	extracellular	51.48	53.63
CDX95899	Canola	extracellular	51.05	53.42
CDX92101	Canola	extracellular, golgi	51.27	53.41
GSMUA_Achr11P...	Banana	extracellular	61.81	53.37
CDY54633	Canola	extracellular	50.42	53.35
CDX82390	Canola	extracellular	50.21	53.01
VIT_05s0077g01740.t01	Wine grape	nucleus	26.37	52.97
Solyc09g075460.2.1	Tomato	extracellular	53.59	52.92
KRG96478	Soybean	endoplasmic reticulum, extracellular	53.8	52.9
Bra001642.1-P	Field mustard	vacuole	50.21	52.77
Bra020656.1-P	Field mustard	extracellular, plasma membrane	52.11	52.55
KRH68221	Soybean	extracellular	54.43	51.91
CDY56436	Canola	extracellular, vacuole	51.9	51.9
AT3G06770.5	Thale cress	extracellular	48.73	51.68
Bra001215.1-P	Field mustard	extracellular	48.73	51.45
CDY05643	Canola	extracellular, plasma membrane, plastid	51.69	51.26
TraesCS4A01G358700.1	Wheat	extracellular	48.31	51.0
CDX86247	Canola	plasma membrane, plastid	51.9	49.1
GSMUA_Achr11P...	Banana	cytosol	60.55	43.35
TraesCS5A01G513600.1	Wheat	extracellular	38.61	40.58
TraesCS7A01G323800.3	Wheat	plastid	40.3	39.38
TraesCS6A01G340000.1	Wheat	mitochondrion	37.76	36.16
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	39.03	35.51
TraesCS7A01G019900.1	Wheat	cytosol	18.78	33.21
TraesCS7A01G019500.1	Wheat	cytosol	18.57	32.84
TraesCS5A01G212900.1	Wheat	plastid	36.5	32.58
TraesCS7A01G019700.1	Wheat	cytosol	6.33	24.39
TraesCS3A01G393600.1	Wheat	extracellular	20.46	21.37
TraesCS5A01G264400.2	Wheat	unclear	20.46	21.23

Protein Annotations

EnsemblPlants:TraesCS5A01G090800.2	EnsemblPlantsGene:TraesCS5A01G090800	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF11	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5A:-:123709703..123713316

Molecular Weight (calculated)

51325.3 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.014

Length

474 amino acids

Sequence
(BLAST)

001: MSPNARHCHR HCHHHVSSVL TRQPLIFFLV VLASLLAVIG LAQGEAQCAR YSGRPRPHSV TITEFGAVGD GLTVNTVPFQ NAIFYLRSFA DKGGAQLYVP
101: KGRWLTGSFN LTSHLTLFLE KDAVIIGTKD VTQWPIVEPL PSYGQGIDLP GARHRSLING HNVTDVIITG NNGIVDGQGL IWWNWFRSNK LNYSRPHLVE
201: FEDSEEIVIS NLTFLDSPAW GIHPVYCSNV TIRNVTIETE LDAPLTNGIV PDSCSNMCIE DSRISVGHDA ISLKSGWDNY GITFGRPTSD IHISRVDLQA
301: SLGAALAFGS EMSGGISDVH VDHLHIHGSS KGISFRTAPG RGGYIRDAIV SDVQMEDVHV AIEFTGDWSS HPDEHFDLSA LPEISGITLK DMVGKNISFA
401: GVLSGIDGDP FTNICLSNIN FSIADSAHSA SWSCSNISGY SESVFPEACS DLHSQSSNSS ICSSTLSYHA LATA

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.