Factsheet for AT5G49215.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 6
vacuole 5
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037429.1-P	Field mustard	extracellular	85.75	86.71
CDY33922	Canola	extracellular	83.52	84.46
CDY56436	Canola	extracellular, vacuole	86.64	82.07
Bra020656.1-P	Field mustard	extracellular, plasma membrane	84.41	80.64
CDY05643	Canola	extracellular, plasma membrane, plastid	84.63	79.5
CDX86247	Canola	plasma membrane, plastid	85.3	76.45
AT3G06770.5	Thale cress	extracellular	74.39	74.72
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	62.81	61.98
KRH37050	Soybean	extracellular, vacuole	61.92	61.5
KRH02302	Soybean	extracellular	61.47	61.47
KRH50791	Soybean	extracellular	61.25	61.25
KRH12027	Soybean	extracellular, vacuole	62.14	59.24
AT3G16850.1	Thale cress	vacuole	59.91	59.12
PGSC0003DMT400081328	Potato	extracellular	58.57	57.3
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	53.23	56.64
PGSC0003DMT400018848	Potato	extracellular	57.24	56.24
Solyc06g009790.2.1	Tomato	extracellular	56.79	55.8
Os12t0554800-01	Rice	cytosol, extracellular	52.34	55.42
Solyc09g075460.2.1	Tomato	extracellular	58.57	54.79
TraesCS5B01G097100.2	Wheat	extracellular	54.34	54.34
Os11t0658800-01	Rice	extracellular	54.12	54.12
TraesCS5D01G102900.1	Wheat	unclear	53.9	53.9
VIT_05s0077g01740.t01	Wine grape	nucleus	28.29	53.81
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	54.34	53.39
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	54.12	53.17
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	53.67	52.74
Zm00001d023813_P001	Maize	extracellular, vacuole	53.9	52.49
KXG29050	Sorghum	extracellular	52.56	52.33
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	54.12	51.27
GSMUA_Achr11P...	Banana	extracellular, vacuole	48.78	49.21
HORVU5Hr1G023800.7	Barley	plastid	54.57	47.76
Zm00001d048696_P001	Maize	extracellular	51.89	47.17
AT3G62110.1	Thale cress	vacuole	46.33	44.16
AT4G23820.1	Thale cress	extracellular, vacuole	43.21	43.69
GSMUA_Achr11P...	Banana	extracellular	52.34	42.81
AT5G41870.1	Thale cress	extracellular	42.54	42.54
AT3G48950.1	Thale cress	extracellular	40.53	38.81
AT4G33440.1	Thale cress	extracellular	40.53	38.32
AT4G23500.1	Thale cress	extracellular, plasma membrane	41.43	37.58
AT2G23900.1	Thale cress	extracellular	39.42	37.11
GSMUA_Achr11P...	Banana	cytosol	53.9	36.56
AT3G42950.1	Thale cress	extracellular, golgi	37.19	34.5
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	36.97	32.81
AT3G61490.4	Thale cress	cytosol, plastid	42.09	32.09
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	22.05	20.2

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:834981	ProteinID:AED95784.1	ArrayExpress:AT5G49215	EnsemblPlantsGene:AT5G49215
RefSeq:AT5G49215	TAIR:AT5G49215	RefSeq:AT5G49215-TAIR-G	EnsemblPlants:AT5G49215.1	TAIR:AT5G49215.1	EMBL:AY090997
EMBL:AY133817	Unigene:At.44190	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	InterPro:Glyco_hydro_28
InterPro:IPR012334	RefSeq:NP_680409.1	PFAM:PF00295	PFAM:PF12708	PO:PO:0000293	PANTHER:PTHR31339
PANTHER:PTHR31339:SF15	InterPro:Pectate_lyase_SF_prot	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q8RX04	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000009D10E	SEG:seg	:	:	:

Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]

Coordinates

chr5:+:19953459..19956145

Molecular Weight (calculated)

48761.3 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.049

Length

449 amino acids

Sequence
(BLAST)

001: MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL
101: FLEKDAVILA SQDPSHWQVT DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH LVEFVSAENV IVSNLTFLNA
201: PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS
301: DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS
401: NISLSIKNSA SPADSWQCSY VDGSSEFVVP EPCLELKSFD SYYGRAEAL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.