Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39678 | Canola | extracellular | 92.24 | 92.05 |
| CDY20264 | Canola | extracellular | 92.24 | 92.05 |
| AT3G48950.1 | Thale cress | extracellular | 74.21 | 75.48 |
| KRG91587 | Soybean | cytosol, extracellular, plastid | 32.91 | 64.34 |
| KRH35240 | Soybean | extracellular | 62.26 | 63.06 |
| KRH35239 | Soybean | extracellular, plasma membrane, plastid | 63.31 | 62.92 |
| KRH38380 | Soybean | extracellular | 61.64 | 61.76 |
| KRH35238 | Soybean | extracellular | 59.33 | 60.73 |
| KRH08861 | Soybean | extracellular | 60.59 | 60.59 |
| Solyc03g007950.2.1 | Tomato | extracellular | 56.39 | 57.6 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 59.33 | 57.17 |
| Bra032138.1-P | Field mustard | cytosol | 91.61 | 54.62 |
| VIT_16s0050g01120.t01 | Wine grape | cytosol | 21.17 | 54.01 |
| PGSC0003DMT400024595 | Potato | cytosol | 53.88 | 53.88 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 57.86 | 46.86 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 41.51 | 44.59 |
| AT3G62110.1 | Thale cress | vacuole | 41.72 | 42.25 |
| AT3G16850.1 | Thale cress | vacuole | 39.2 | 41.1 |
| AT5G41870.1 | Thale cress | extracellular | 38.57 | 40.98 |
| AT4G33440.1 | Thale cress | extracellular | 39.83 | 40.0 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 37.11 | 39.42 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 39.2 | 38.64 |
| AT3G06770.5 | Thale cress | extracellular | 34.8 | 37.14 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 37.74 | 35.57 |
| VIT_16s0050g01110.t01 | Wine grape | extracellular, golgi | 64.15 | 29.12 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 23.27 | 22.65 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:816922 | ProteinID:AEC07500.1 | ArrayExpress:AT2G23900 | EnsemblPlantsGene:AT2G23900 |
| RefSeq:AT2G23900 | TAIR:AT2G23900 | RefSeq:AT2G23900-TAIR-G | EnsemblPlants:AT2G23900.1 | TAIR:AT2G23900.1 | EMBL:DQ446556 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_179968.2 | PFAM:PF00295 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF17 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q1PF10 | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI000034ED77 |
| SEG:seg | : | : | : | : | : |
Description
Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
Coordinates
chr2:+:10174515..10176858
Molecular Weight (calculated)
51647.4 Da
IEP (calculated)
8.631
GRAVY (calculated)
-0.014
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.