Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75352 | Canola | extracellular | 88.42 | 88.98 |
| CDX68976 | Canola | extracellular | 88.21 | 88.96 |
| Bra011440.1-P | Field mustard | extracellular | 88.42 | 88.61 |
| CDX72404 | Canola | extracellular | 88.0 | 88.37 |
| CDY46115 | Canola | extracellular | 87.79 | 88.16 |
| Bra037005.1-P | Field mustard | extracellular | 87.16 | 86.79 |
| KRH53903 | Soybean | extracellular, plasma membrane, plastid | 66.32 | 66.04 |
| VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 69.89 | 64.22 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 65.68 | 63.93 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 65.05 | 63.58 |
| GSMUA_Achr2P08050_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 56.0 | 60.18 |
| TraesCS7D01G320900.1 | Wheat | plastid | 60.21 | 58.97 |
| TraesCS7A01G323800.3 | Wheat | plastid | 60.0 | 58.76 |
| TraesCS7B01G224700.1 | Wheat | plastid | 59.37 | 58.14 |
| Os08t0107300-00 | Rice | extracellular, mitochondrion | 58.74 | 57.88 |
| KXG24195 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane, plastid | 60.21 | 57.55 |
| Zm00001d034990_P001 | Maize | plasma membrane | 58.53 | 56.39 |
| Zm00001d021964_P001 | Maize | cytosol | 18.32 | 51.79 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 47.79 | 51.13 |
| AT5G41870.1 | Thale cress | extracellular | 48.0 | 50.78 |
| HORVU7Hr1G077560.12 | Barley | plastid | 49.89 | 49.07 |
| AT3G62110.1 | Thale cress | vacuole | 48.42 | 48.83 |
| AT3G16850.1 | Thale cress | vacuole | 42.32 | 44.18 |
| AT3G48950.1 | Thale cress | extracellular | 41.89 | 42.43 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 44.0 | 42.22 |
| AT3G06770.5 | Thale cress | extracellular | 38.74 | 41.16 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 38.32 | 40.53 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 42.74 | 40.12 |
| AT2G23900.1 | Thale cress | extracellular | 40.0 | 39.83 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 40.42 | 39.67 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 42.32 | 34.13 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 21.89 | 21.22 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:829481 | UniProt:A0A178V3I0 | ProteinID:AEE86225.1 | ArrayExpress:AT4G33440 |
| EnsemblPlantsGene:AT4G33440 | RefSeq:AT4G33440 | TAIR:AT4G33440 | RefSeq:AT4G33440-TAIR-G | EnsemblPlants:AT4G33440.1 | TAIR:AT4G33440.1 |
| EMBL:BT002785 | EMBL:BT004354 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_195070.2 | ProteinID:OAO99451.1 | PFAM:PF00295 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF4 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| UniProt:Q84K13 | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI000000BDC2 | SEG:seg |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
Coordinates
chr4:+:16091535..16094965
Molecular Weight (calculated)
52203.4 Da
IEP (calculated)
7.249
GRAVY (calculated)
-0.115
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.