Factsheet for Bra011440.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75352	Canola	extracellular	97.89	98.31
CDX68976	Canola	extracellular	95.99	96.6
Bra037005.1-P	Field mustard	extracellular	92.19	91.61
AT4G33440.1	Thale cress	extracellular	88.61	88.42
KRH53903	Soybean	extracellular, plasma membrane, plastid	66.88	66.46
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	70.04	64.22
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	66.03	64.14
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	65.61	63.99
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	57.81	61.99
TraesCS7D01G320900.1	Wheat	plastid	61.6	60.21
TraesCS7A01G323800.3	Wheat	plastid	61.39	60.0
TraesCS7B01G224700.1	Wheat	plastid	60.97	59.59
Os08t0107300-00	Rice	extracellular, mitochondrion	60.55	59.54
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	62.03	59.15
Zm00001d034990_P001	Maize	plasma membrane	60.34	58.01
Zm00001d021964_P001	Maize	cytosol	18.57	52.38
Bra028511.1-P	Field mustard	extracellular	48.95	51.9
Bra013734.1-P	Field mustard	extracellular, vacuole	48.1	51.35
HORVU7Hr1G077560.12	Barley	plastid	51.27	50.31
Bra019264.1-P	Field mustard	extracellular, vacuole	46.84	49.22
Bra007662.1-P	Field mustard	extracellular, plasma membrane	45.57	46.96
Bra003485.1-P	Field mustard	extracellular, golgi	45.36	46.94
Bra022182.1-P	Field mustard	extracellular, golgi	43.46	45.47
Bra001642.1-P	Field mustard	vacuole	41.77	43.9
Bra018023.1-P	Field mustard	extracellular	42.83	43.28
Bra001215.1-P	Field mustard	extracellular	40.93	43.21
Bra019299.1-P	Field mustard	extracellular, plasma membrane	44.94	43.2
Bra013697.1-P	Field mustard	extracellular, plasma membrane	44.73	43.0
Bra018004.1-P	Field mustard	cytosol	39.24	42.56
Bra037429.1-P	Field mustard	extracellular	39.45	42.12
Bra007609.1-P	Field mustard	extracellular	40.3	40.64
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	43.25	40.43
Bra020656.1-P	Field mustard	extracellular, plasma membrane	39.66	40.0
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	40.72	38.45
Bra032138.1-P	Field mustard	cytosol	39.45	23.38
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	23.0	22.8
Bra007626.1-P	Field mustard	mitochondrion	20.46	16.7

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra011440	EnsemblPlants:Bra011440.1	EnsemblPlants:Bra011440.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4D4N6	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI0002545CB3	SEG:seg	:	:	:	:

Description

AT4G33440 (E=7e-224) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA01:-:2158379..2161250

Molecular Weight (calculated)

51902.1 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.103

Length

474 amino acids

Sequence
(BLAST)

001: MESEKTSVVS SITRPSWVLL LLAFTVLAIL SHQISSNSFL PLFISTTTTT RIHDPVTCSG FFTHDPSPKR IVMSITEFGG VGDGKTSNTE AFRRAVRHLR
101: GFAGEGGAQL NVPKGTWLSG SFNLTSNFTL FLEQGAVILG SQDPEEWPII EPLPSYGRGR ERPGGRHISL IHGDNLTNVV ITGENGTIDG QGKMWWELWW
201: NRTLVHTRGH LIEIKNSHNI LISNLTLLNS PFWTVHPVYC SNVVIRDMTI LAPMNAPNTD GIDPDSSTNV CIEDCYIESG DDLVAVKSGW DQYGMAMARP
301: SSNIIIRRIS GTTRTCSGVG IGSEMSGGIF NITVQDIHVW DSAAGLRIKT DVGRGGYISN ITISNVLLEK VKVPIRFSRG SNDHPDDKWD PKAMPRVNGI
401: YISNVVSVDS RKAPMLLGVE GGTFQDICLR NVTLLGLPES EKWKCKDVSG YASDVFPLSC PQLLQKEGSV SQCL

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.