Factsheet for Bra018004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08113	Canola	extracellular	99.08	94.96
Bra018023.1-P	Field mustard	extracellular	74.14	69.08
KRG91587	Soybean	cytosol, extracellular, plastid	35.7	63.93
KRH35240	Soybean	extracellular	66.36	61.57
KRH35239	Soybean	extracellular, plasma membrane, plastid	66.82	60.83
KRH35238	Soybean	extracellular	63.84	59.87
KRH38380	Soybean	extracellular	63.16	57.98
KRH08861	Soybean	extracellular	62.7	57.44
Bra013697.1-P	Field mustard	extracellular, plasma membrane	62.01	54.97
Bra019299.1-P	Field mustard	extracellular, plasma membrane	62.01	54.97
Solyc03g007950.2.1	Tomato	extracellular	57.44	53.75
VIT_16s0050g01120.t01	Wine grape	cytosol	22.65	52.94
Bra007609.1-P	Field mustard	extracellular	56.75	52.77
PGSC0003DMT400024595	Potato	cytosol	57.21	52.41
Bra013734.1-P	Field mustard	extracellular, vacuole	42.79	42.12
Bra019264.1-P	Field mustard	extracellular, vacuole	43.02	41.69
Bra007662.1-P	Field mustard	extracellular, plasma membrane	43.25	41.09
Bra032138.1-P	Field mustard	cytosol	74.83	40.88
Bra003485.1-P	Field mustard	extracellular, golgi	42.33	40.39
Bra028511.1-P	Field mustard	extracellular	40.96	40.04
Bra037005.1-P	Field mustard	extracellular	43.48	39.83
Bra022182.1-P	Field mustard	extracellular, golgi	41.19	39.74
Bra001642.1-P	Field mustard	vacuole	40.96	39.69
Bra011440.1-P	Field mustard	extracellular	42.56	39.24
Bra037429.1-P	Field mustard	extracellular	39.59	38.96
Bra020656.1-P	Field mustard	extracellular, plasma membrane	39.36	36.6
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	41.42	36.06
Bra001215.1-P	Field mustard	extracellular	36.61	35.63
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	39.82	34.32
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	63.62	26.45
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.88	20.92
Bra007626.1-P	Field mustard	mitochondrion	20.82	15.66

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra018004	EnsemblPlants:Bra018004.1	EnsemblPlants:Bra018004.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DNB7	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000253F229

Description

AT2G23900 (E=2e-199) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:+:9445569..9447452

Molecular Weight (calculated)

47712.5 Da

IEP (calculated)

8.030

GRAVY (calculated)

-0.127

Length

437 amino acids

Sequence
(BLAST)

001: MESSVESKKG IEYMAMQCRK HKAVLTDFGA VGDGKTSNTK AFRDAISKLT PQAADGGVQL IVPPGNWLTG SFNLTSHFTL FIQQGATILA SQVESEYPMI
101: PRLPSYGDAR FASLIYGTNL TDVVITGNKG TINGQGKSWW LKYRSGGFNL ISRPLLIEIL YSENIQISDI NLVDSPMWNI HPVYCKNVII KNIKIDAPID
201: SPNTDGINPD SCTNTLIEDC SVTSGDDCIA VKSGIDQYGI ATAIPTQQLS IRRLTCVSPD SAGIAIGSEM SGGIKDVRIE DVTLINTQSA IRIKTAIGRG
301: GYVKDIFARR FTMKNMKYVF WMTGSYKLHP IGFDPNALPE IRNINYRDMT ADNVTISAKL EGIKKDPFTG ICMSNVTMDL SPTTKKLQWN CTDVAGVTSR
401: VKPEPCSLLP SKGPAMDCHF PTDKIPIESV VLNKCTA

Best Arabidopsis Sequence Match ( AT2G23900.1 )
(BLAST)

001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA

Arabidopsis Description

Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.