Factsheet for Bra019264.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10970	Canola	extracellular, vacuole	99.33	99.33
Bra013734.1-P	Field mustard	extracellular, vacuole	88.69	90.09
AT4G23820.1	Thale cress	extracellular, vacuole	87.8	89.19
KRG99037	Soybean	nucleus	71.84	73.3
KRH45957	Soybean	extracellular	70.95	72.23
VIT_02s0025g01330.t01	Wine grape	extracellular	70.29	70.92
GSMUA_Achr10P...	Banana	cytosol	63.64	69.66
GSMUA_Achr8P19900_001	Banana	cytosol	63.86	69.4
KRH14547	Soybean	extracellular	68.51	69.28
PGSC0003DMT400031687	Potato	extracellular	68.29	68.9
KRH73576	Soybean	extracellular	41.24	67.39
GSMUA_Achr6P14280_001	Banana	cytosol	58.98	66.17
GSMUA_Achr4P08470_001	Banana	extracellular	59.87	65.69
Solyc08g082170.2.1	Tomato	nucleus	67.85	65.52
Bra028511.1-P	Field mustard	extracellular	63.86	64.43
Os01t0618900-01	Rice	cytosol, extracellular	46.56	63.83
Os02t0256100-01	Rice	extracellular	62.31	63.43
EES04867	Sorghum	extracellular, plasma membrane	61.64	62.05
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	55.65	61.82
TraesCS3B01G253000.1	Wheat	extracellular	61.42	61.56
EES20030	Sorghum	extracellular	59.2	60.82
Zm00001d053395_P001	Maize	extracellular	60.75	60.75
TraesCS3D01G230000.1	Wheat	extracellular	60.31	60.44
Os05t0587000-01	Rice	extracellular	59.42	59.82
Zm00001d009717_P001	Maize	extracellular	57.65	58.3
EES01085	Sorghum	extracellular	57.43	57.94
Zm00001d011369_P001	Maize	extracellular	53.22	53.93
HORVU3Hr1G054810.4	Barley	extracellular	60.53	50.46
Bra011440.1-P	Field mustard	extracellular	49.22	46.84
Bra037005.1-P	Field mustard	extracellular	49.45	46.75
Bra003485.1-P	Field mustard	extracellular, golgi	45.68	44.98
Bra022182.1-P	Field mustard	extracellular, golgi	45.01	44.81
Bra007662.1-P	Field mustard	extracellular, plasma membrane	44.57	43.7
Bra001642.1-P	Field mustard	vacuole	43.46	43.46
Bra018004.1-P	Field mustard	cytosol	41.69	43.02
Bra037429.1-P	Field mustard	extracellular	42.35	43.02
Bra001215.1-P	Field mustard	extracellular	42.35	42.54
Bra018023.1-P	Field mustard	extracellular	44.12	42.43
Bra020656.1-P	Field mustard	extracellular, plasma membrane	43.46	41.7
Bra007609.1-P	Field mustard	extracellular	43.24	41.49
Bra013697.1-P	Field mustard	extracellular, plasma membrane	43.46	39.76
Bra019299.1-P	Field mustard	extracellular, plasma membrane	42.79	39.15
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	42.57	38.25
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	42.79	38.07
Bra032138.1-P	Field mustard	cytosol	42.13	23.75
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	23.73	22.38
Bra007626.1-P	Field mustard	mitochondrion	22.84	17.73

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra019264	EnsemblPlants:Bra019264.1	EnsemblPlants:Bra019264.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DRX1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002540F60	:	:	:	:

Description

AT4G23820 (E=2e-236) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:-:25372839..25375646

Molecular Weight (calculated)

49247.7 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.083

Length

451 amino acids

Sequence
(BLAST)

001: MWRLSISVVF LPCIAAFLLT ALSSAYGYGD SEATCSGIVP LRYRNDKISI TDFGGVGDGR TVNSKAFRAA IYRIQHLRRR GGTVLYIPPG VFLTESFSLT
101: SHMTLFLARG AVIKAVQDTR NWPLIDPLPS YGRGRELPGA RYMSFIHGDG LRDVFITGQN GTIDGQGEVW WNMWRSRTLK FTRPNLIEFK NSKEIIISNV
201: IFQNSPFWNI HPVYCSDVVI HHVTILAPQD SPNTDGIDPD SSNNVCIEDS YISTGDDLVA IKSGWDEYGI AFGRPSSNIT IRRITGSSPY AGIAIGSETS
301: GGIKNIVAEH ISLSNMGLGV NIKTNIGRGG YIKNIKISNV YVENAKYGIK IAGDTGDHPD AFYNPNALPI VKGIHINNVW GVNVQNAGSI QGLKGSPFTG
401: ICLSEINLHG SLNSYRTWKC SDVIGTSLKV SPWPCSELRT TSGSYSCSST F

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.