Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03516 | Canola | extracellular, vacuole | 90.32 | 90.32 |
| CDY47619 | Canola | extracellular, vacuole | 90.09 | 90.09 |
| Bra013734.1-P | Field mustard | extracellular, vacuole | 90.09 | 90.09 |
| CDY10970 | Canola | extracellular, vacuole | 89.64 | 88.25 |
| CDX94222 | Canola | extracellular | 89.41 | 88.03 |
| Bra019264.1-P | Field mustard | extracellular, vacuole | 89.19 | 87.8 |
| KRG99037 | Soybean | nucleus | 73.65 | 73.98 |
| VIT_02s0025g01330.t01 | Wine grape | extracellular | 73.87 | 73.38 |
| KRH45957 | Soybean | extracellular | 72.97 | 73.14 |
| PGSC0003DMT400031687 | Potato | extracellular | 70.95 | 70.47 |
| KRH14547 | Soybean | extracellular | 70.5 | 70.18 |
| GSMUA_Achr10P... | Banana | cytosol | 64.86 | 69.9 |
| GSMUA_Achr8P19900_001 | Banana | cytosol | 64.41 | 68.92 |
| GSMUA_Achr6P14280_001 | Banana | cytosol | 61.04 | 67.41 |
| GSMUA_Achr4P08470_001 | Banana | extracellular | 62.39 | 67.4 |
| KRH73576 | Soybean | extracellular | 41.67 | 67.03 |
| Solyc08g082170.2.1 | Tomato | nucleus | 70.27 | 66.81 |
| Os01t0618900-01 | Rice | cytosol, extracellular | 48.87 | 65.96 |
| AT5G41870.1 | Thale cress | extracellular | 65.99 | 65.26 |
| GSMUA_Achr4P15650_001 | Banana | extracellular, plasma membrane, vacuole | 58.11 | 63.55 |
| TraesCS3B01G253000.1 | Wheat | extracellular | 63.29 | 62.44 |
| Os02t0256100-01 | Rice | extracellular | 62.16 | 62.3 |
| EES20030 | Sorghum | extracellular | 60.81 | 61.5 |
| TraesCS3D01G230000.1 | Wheat | extracellular | 61.94 | 61.11 |
| Os05t0587000-01 | Rice | extracellular | 60.81 | 60.27 |
| EES04867 | Sorghum | extracellular, plasma membrane | 60.59 | 60.04 |
| Zm00001d053395_P001 | Maize | extracellular | 60.59 | 59.65 |
| EES01085 | Sorghum | extracellular | 59.91 | 59.51 |
| Zm00001d009717_P001 | Maize | extracellular | 58.78 | 58.52 |
| Zm00001d011369_P001 | Maize | extracellular | 56.08 | 55.96 |
| HORVU3Hr1G054810.4 | Barley | extracellular | 61.94 | 50.83 |
| AT4G33440.1 | Thale cress | extracellular | 51.13 | 47.79 |
| AT3G16850.1 | Thale cress | vacuole | 47.3 | 46.15 |
| AT3G62110.1 | Thale cress | vacuole | 48.87 | 46.07 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 43.69 | 43.21 |
| AT3G06770.5 | Thale cress | extracellular | 43.47 | 43.18 |
| AT3G48950.1 | Thale cress | extracellular | 45.5 | 43.07 |
| AT2G23900.1 | Thale cress | extracellular | 44.59 | 41.51 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 45.72 | 41.01 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 43.92 | 40.29 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 44.82 | 39.33 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 45.72 | 34.47 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 24.32 | 22.04 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:828482 | ProteinID:AEE84810.1 | ArrayExpress:AT4G23820 | EnsemblPlantsGene:AT4G23820 |
| RefSeq:AT4G23820 | TAIR:AT4G23820 | RefSeq:AT4G23820-TAIR-G | EnsemblPlants:AT4G23820.1 | TAIR:AT4G23820.1 | EMBL:AY062697 |
| EMBL:AY128793 | Unigene:At.22227 | ProteinID:CAA23048.1 | ProteinID:CAB81300.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_194113.1 | PFAM:PF00295 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF3 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9SUP5 | SMART:SM00710 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI00000489D3 | SEG:seg | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
Coordinates
chr4:-:12397038..12400231
Molecular Weight (calculated)
48637.9 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.150
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.