Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 6
- plastid 2
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 90.5 | 87.43 |
| Bra039462.1-P | Field mustard | extracellular, mitochondrion, plastid | 90.29 | 87.05 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 90.08 | 86.85 |
| GSMUA_Achr9P18190_001 | Banana | mitochondrion | 70.87 | 69.86 |
| GSMUA_Achr3P10280_001 | Banana | mitochondrion | 68.8 | 69.52 |
| GSMUA_Achr5P22120_001 | Banana | extracellular | 68.8 | 67.68 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 70.04 | 67.0 |
| PGSC0003DMT400036866 | Potato | extracellular, golgi | 67.15 | 66.74 |
| Os02t0781000-01 | Rice | extracellular | 39.05 | 66.32 |
| Solyc03g117750.2.1 | Tomato | extracellular, golgi | 66.53 | 66.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 65.5 | 64.56 |
| Zm00001d052103_P001 | Maize | plasma membrane | 64.88 | 63.43 |
| EES05901 | Sorghum | extracellular, golgi | 64.88 | 62.8 |
| TraesCS6B01G371200.2 | Wheat | mitochondrion | 64.05 | 62.63 |
| TraesCS6A01G340000.1 | Wheat | mitochondrion | 63.43 | 62.02 |
| TraesCS6D01G320600.1 | Wheat | mitochondrion | 63.22 | 61.82 |
| GSMUA_Achr8P23620_001 | Banana | extracellular, golgi, mitochondrion, plasma membrane | 62.6 | 60.72 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 40.29 | 43.92 |
| AT5G41870.1 | Thale cress | extracellular | 39.05 | 42.09 |
| AT3G48950.1 | Thale cress | extracellular | 39.67 | 40.94 |
| AT4G33440.1 | Thale cress | extracellular | 39.67 | 40.42 |
| AT2G23900.1 | Thale cress | extracellular | 38.64 | 39.2 |
| AT3G62110.1 | Thale cress | vacuole | 37.81 | 38.85 |
| AT3G16850.1 | Thale cress | vacuole | 35.33 | 37.58 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 38.43 | 37.58 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 34.5 | 37.19 |
| AT3G06770.5 | Thale cress | extracellular | 33.47 | 36.24 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 36.57 | 30.05 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 22.11 | 21.84 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:823351 | UniProt:A0A178VA74 | ProteinID:AEE77760.1 | ArrayExpress:AT3G42950 |
| EnsemblPlantsGene:AT3G42950 | RefSeq:AT3G42950 | TAIR:AT3G42950 | RefSeq:AT3G42950-TAIR-G | EnsemblPlants:AT3G42950.1 | TAIR:AT3G42950.1 |
| EMBL:AY050383 | ProteinID:CAB86682.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_189881.1 | ProteinID:OAP02581.1 | PFAM:PF00295 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF21 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| UniProt:Q9M1L0 | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI00000487BB | SEG:seg |
Description
AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
Coordinates
chr3:+:15015086..15018653
Molecular Weight (calculated)
54075.5 Da
IEP (calculated)
8.718
GRAVY (calculated)
-0.189
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.