Factsheet for TraesCS6B01G371200.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	extracellular, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G340000.1	Wheat	mitochondrion	97.98	97.98
TraesCS6D01G320600.1	Wheat	mitochondrion	97.78	97.78
Os02t0781000-01	Rice	extracellular	50.1	87.02
Zm00001d052103_P001	Maize	plasma membrane	85.45	85.45
EES05901	Sorghum	extracellular, golgi	85.86	85.0
KRH19342	Soybean	endoplasmic reticulum	69.9	70.47
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	69.29	69.72
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	67.27	67.55
CDX83782	Canola	extracellular, golgi, plastid	69.09	67.46
CDX96676	Canola	extracellular, golgi, plastid	68.89	67.26
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	68.89	67.26
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	68.28	66.8
PGSC0003DMT400007594	Potato	extracellular	65.66	65.66
Solyc12g009210.1.1	Tomato	nucleus	65.25	65.25
Solyc07g042160.2.1	Tomato	nucleus	65.05	65.18
GSMUA_Achr11P...	Banana	mitochondrion	64.04	64.56
KRH12568	Soybean	plastid	63.43	64.21
AT3G42950.1	Thale cress	extracellular, golgi	62.63	64.05
KRH37525	Soybean	extracellular, plasma membrane	63.84	63.97
CDY27797	Canola	extracellular, mitochondrion, plastid	64.44	63.67
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	64.24	63.35
CDY41934	Canola	extracellular, mitochondrion, plastid	64.24	63.35
CDY53228	Canola	extracellular	14.14	62.5
Solyc03g117750.2.1	Tomato	extracellular, golgi	61.21	62.22
PGSC0003DMT400036866	Potato	extracellular, golgi	60.61	61.6
KRH55874	Soybean	cytosol	7.88	59.09
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	59.39	58.92
TraesCS5B01G210900.1	Wheat	plastid	61.41	57.25
TraesCS3B01G253000.1	Wheat	extracellular	40.61	44.67
TraesCS7B01G224700.1	Wheat	plastid	41.21	42.06
TraesCS5B01G513100.1	Wheat	extracellular	40.4	42.02
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	37.78	40.92
TraesCS5B01G097100.2	Wheat	extracellular	36.57	40.31
TraesCS4B01G344700.1	Wheat	extracellular	38.79	39.51
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	22.42	24.03

Protein Annotations

EnsemblPlants:TraesCS6B01G371200.2	EnsemblPlantsGene:TraesCS6B01G371200	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr6B:+:645351055..645353904

Molecular Weight (calculated)

54312.9 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.133

Length

495 amino acids

Sequence
(BLAST)

001: MVETSGGRWR LHLHGQRRSA AAFLAANKTL LAAVWVAGFA LVFLWQSASV FVAGGGGGPR PAPAPSRPAP RLRPMAYNLT DFGGVGDGRA VNTRAFERAV
101: ETISAFADSG GAQLNVPPGR WLTGPFNLTS HMTLFLAEGA EILGITDEKV WPLMPALPSY GYGRERKGPR FGSLIHGQNL KDVVITGYNG SINGQGEVWW
201: LKHRRRMLKN TRPPLVQLMW SMDIVITNIT LRNSPFWHFH PYDCTNVTVS DVTILAPISG APNTDGIDPD SCEDVLIENC YISVGDDAIA IKSGWDQYGI
301: AYGRPSSNIL IRNVTVRSLV SAGISIGSEM SGGVANVTVE NVRIWDSRRG VRIKTAIGRG GYIRNISYSN ITFDNVRAAI VIKVDYNEHA DDGYDRNAFP
401: DITGISFRKI HGWGVRVPVR AHGSNYIPIK DITFQDMSVG ISYKKKHIFQ CSYIEGRVIG SVFPKPCENL DVYDEQGQLV KRGAVLNSTE VDYDI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.