Factsheet for TraesCS3B01G253000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G230000.1	Wheat	extracellular	96.67	96.67
Os01t0618900-01	Rice	cytosol, extracellular	64.67	88.45
EES01085	Sorghum	extracellular	84.0	84.56
Zm00001d011369_P001	Maize	extracellular	80.22	81.12
HORVU3Hr1G054810.4	Barley	extracellular	92.89	77.26
GSMUA_Achr4P08470_001	Banana	extracellular	66.22	72.51
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	61.11	67.73
PGSC0003DMT400031687	Potato	extracellular	63.56	63.98
VIT_02s0025g01330.t01	Wine grape	extracellular	62.89	63.31
AT4G23820.1	Thale cress	extracellular, vacuole	62.44	63.29
KRG99037	Soybean	nucleus	62.0	63.12
KRH73576	Soybean	extracellular	38.67	63.04
KRH45957	Soybean	extracellular	62.0	62.98
CDY47619	Canola	extracellular, vacuole	62.0	62.84
Bra013734.1-P	Field mustard	extracellular, vacuole	61.78	62.61
KRH14547	Soybean	extracellular	62.0	62.56
CDY03516	Canola	extracellular, vacuole	61.56	62.39
CDY10970	Canola	extracellular, vacuole	61.78	61.64
CDX94222	Canola	extracellular	61.56	61.42
Bra019264.1-P	Field mustard	extracellular, vacuole	61.56	61.42
Solyc08g082170.2.1	Tomato	nucleus	63.33	61.03
CDX67513	Canola	extracellular	58.22	58.61
Bra028511.1-P	Field mustard	extracellular	58.22	58.61
CDY13383	Canola	extracellular	57.78	58.43
AT5G41870.1	Thale cress	extracellular	58.0	58.13
TraesCS5B01G513100.1	Wheat	extracellular	48.0	45.38
TraesCS7B01G224700.1	Wheat	plastid	46.89	43.51
TraesCS4B01G344700.1	Wheat	extracellular	46.22	42.8
TraesCS5B01G097100.2	Wheat	extracellular	42.67	42.76
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	42.89	42.23
TraesCS6B01G371200.2	Wheat	mitochondrion	44.67	40.61
TraesCS5B01G210900.1	Wheat	plastid	46.0	38.98
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	23.78	23.16

Protein Annotations

EnsemblPlants:TraesCS3B01G253000.1	EnsemblPlantsGene:TraesCS3B01G253000	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF16	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr3B:+:406459794..406462697

Molecular Weight (calculated)

47827.9 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.011

Length

450 amino acids

Sequence
(BLAST)

001: MLYVAPKWRC LLAVAAAIAA MLSAAGGAGA QETCSGAVPA PPKRGAWMSI ASFGGAGDGR TLNTAAFAAA VSSIQRRRAR GGALLYVPPG VWLTGPFSLT
101: SHMTLFLARG AVIRATQDTS SWPLIDPLPS YGRGRELPGK RYISLIHGNG LQDVFITGEN GTIDGQGSVW WDMWKKGTLP FTRPHLLELM DSSNTIVSNL
201: VFQDSPFWNI HPVYCSNVVI RNLTILAPHD SPNTDGIDPD SSSNVCIEDC YISTGDDLIA IKSGWDEYGI AYGRPSSDIT IRRITGSSPF AGFSVGSETS
301: GGVENVLAEH LNFYSSGFGV HIKTNSGRGG FIRNITVSDV VLDNVRYGLR IAGDVGGHPD ERYNHNALPI VDSLTIKNVQ GQNVREAGLI KGIPNSAFSR
401: ICLSNIKLHG SAPVRPWKCA AVSGGALDVQ PSPCTELTST SGMSFCTNSL

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.