Factsheet for Bra013734.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47619	Canola	extracellular, vacuole	99.32	99.32
AT4G23820.1	Thale cress	extracellular, vacuole	90.09	90.09
Bra019264.1-P	Field mustard	extracellular, vacuole	90.09	88.69
KRG99037	Soybean	nucleus	73.42	73.76
KRH45957	Soybean	extracellular	72.75	72.91
VIT_02s0025g01330.t01	Wine grape	extracellular	72.97	72.48
PGSC0003DMT400031687	Potato	extracellular	70.5	70.02
GSMUA_Achr10P...	Banana	cytosol	64.86	69.9
KRH14547	Soybean	extracellular	70.05	69.73
GSMUA_Achr8P19900_001	Banana	cytosol	64.64	69.16
GSMUA_Achr4P08470_001	Banana	extracellular	62.61	67.64
KRH73576	Soybean	extracellular	41.89	67.39
GSMUA_Achr6P14280_001	Banana	cytosol	60.59	66.92
Solyc08g082170.2.1	Tomato	nucleus	70.05	66.6
Os01t0618900-01	Rice	cytosol, extracellular	48.42	65.35
Bra028511.1-P	Field mustard	extracellular	65.54	65.1
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	58.78	64.29
Os02t0256100-01	Rice	extracellular	62.39	62.53
EES20030	Sorghum	extracellular	61.71	62.41
EES04867	Sorghum	extracellular, plasma membrane	62.61	62.05
TraesCS3B01G253000.1	Wheat	extracellular	62.61	61.78
Os05t0587000-01	Rice	extracellular	61.94	61.38
Zm00001d053395_P001	Maize	extracellular	61.71	60.75
TraesCS3D01G230000.1	Wheat	extracellular	61.49	60.67
Zm00001d009717_P001	Maize	extracellular	60.81	60.54
EES01085	Sorghum	extracellular	59.68	59.28
Zm00001d011369_P001	Maize	extracellular	55.86	55.73
HORVU3Hr1G054810.4	Barley	extracellular	61.26	50.28
Bra011440.1-P	Field mustard	extracellular	51.35	48.1
Bra037005.1-P	Field mustard	extracellular	51.13	47.59
Bra003485.1-P	Field mustard	extracellular, golgi	47.52	46.07
Bra022182.1-P	Field mustard	extracellular, golgi	45.95	45.03
Bra007662.1-P	Field mustard	extracellular, plasma membrane	45.95	44.35
Bra001642.1-P	Field mustard	vacuole	44.82	44.12
Bra037429.1-P	Field mustard	extracellular	43.24	43.24
Bra018004.1-P	Field mustard	cytosol	42.12	42.79
Bra018023.1-P	Field mustard	extracellular	45.05	42.64
Bra001215.1-P	Field mustard	extracellular	42.34	41.87
Bra007609.1-P	Field mustard	extracellular	44.14	41.7
Bra020656.1-P	Field mustard	extracellular, plasma membrane	44.14	41.7
Bra013697.1-P	Field mustard	extracellular, plasma membrane	45.27	40.77
Bra019299.1-P	Field mustard	extracellular, plasma membrane	45.05	40.57
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	43.47	38.45
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	43.69	38.26
Bra032138.1-P	Field mustard	cytosol	43.24	24.0
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	24.55	22.8
Bra007626.1-P	Field mustard	mitochondrion	23.87	18.24

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra013734	EnsemblPlants:Bra013734.1	EnsemblPlants:Bra013734.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DB74	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI0002545ED5	:	:	:	:	:

Description

AT4G23820 (E=2e-241) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA01:-:7490254..7493204

Molecular Weight (calculated)

48451.6 Da

IEP (calculated)

8.019

GRAVY (calculated)

-0.124

Length

444 amino acids

Sequence
(BLAST)

001: MWRFSVLILL CSHLAVSSSS LGDSEATCSG IVPLPNRNDR ISITDFGGVG DGRTVNTKAF REAIYRIQHL KRRGGTLLYI PPGVFLTESF NLTSHMTLFL
101: AKGAVLKAVQ DTWNWPLIDP LPSYGRGREL PGARYMSFIH GDGLRDVVIT GENGTIDGQG EVWWNMWRSR TLKFTRPNLI ELKNSKEIII SNVVFQNSPF
201: WNIHPVYCSD VVIHHVTILA PQDSPNTDGI DPDSSSNVCI EDSYISTGDD LVAIKSGWDE YGIAFGRPSS NITIRRITGS TPFAGIAIGS ETSGGIKNIV
301: AEHISLSNMG VGVNIKTNIG RGGYIKNIRI SNVYVENARY GIKIAGDTGD HPDAYYNPNA LPVVKGIHIN NVWGVNVRNA GSIQGLKDSP FTGICLSEIN
401: IHGSLNTNRT WKCSDVIGTS LKVSPWPCSE LRTTGGSYSC SSTF

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.