Factsheet for GSMUA_Achr8P19900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.95	88.59
GSMUA_Achr6P14280_001	Banana	cytosol	78.31	80.85
GSMUA_Achr4P08470_001	Banana	extracellular	69.16	69.83
KRH73576	Soybean	extracellular	45.3	68.12
VIT_02s0025g01330.t01	Wine grape	extracellular	73.01	67.79
KRH45957	Soybean	extracellular	72.29	67.72
KRG99037	Soybean	nucleus	72.05	67.65
KRH14547	Soybean	extracellular	71.81	66.82
PGSC0003DMT400031687	Potato	extracellular	70.12	65.1
CDY03516	Canola	extracellular, vacuole	69.16	64.64
Bra013734.1-P	Field mustard	extracellular, vacuole	69.16	64.64
CDY47619	Canola	extracellular, vacuole	68.92	64.41
AT4G23820.1	Thale cress	extracellular, vacuole	68.92	64.41
CDY10970	Canola	extracellular, vacuole	69.4	63.86
CDX94222	Canola	extracellular	69.4	63.86
Bra019264.1-P	Field mustard	extracellular, vacuole	69.4	63.86
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	61.69	63.05
Solyc08g082170.2.1	Tomato	nucleus	70.36	62.53
AT5G41870.1	Thale cress	extracellular	67.23	62.14
Bra028511.1-P	Field mustard	extracellular	66.75	61.97
CDX67513	Canola	extracellular	66.75	61.97
CDY13383	Canola	extracellular	65.54	61.12
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	23.13	54.55
GSMUA_Achr8P06180_001	Banana	extracellular	48.67	51.4
GSMUA_AchrUn_...	Banana	extracellular	47.23	49.87
GSMUA_Achr4P05580_001	Banana	cytosol	34.46	45.83
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	46.27	45.5
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	46.75	43.89
GSMUA_Achr11P...	Banana	cytosol	32.77	43.59
GSMUA_Achr11P...	Banana	cytosol	31.81	43.28
GSMUA_Achr9P18190_001	Banana	mitochondrion	48.43	40.94
GSMUA_Achr3P10280_001	Banana	mitochondrion	46.99	40.71
GSMUA_Achr5P22120_001	Banana	extracellular	47.47	40.04
GSMUA_Achr11P...	Banana	mitochondrion	46.99	39.71
GSMUA_Achr11P...	Banana	extracellular	45.54	39.71
GSMUA_Achr11P...	Banana	extracellular, vacuole	42.41	39.55
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	47.23	39.28
GSMUA_Achr11P...	Banana	extracellular	47.23	35.7
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	16.39	33.83
GSMUA_Achr11P...	Banana	cytosol	45.06	28.25
GSMUA_Achr3P11090_001	Banana	extracellular	24.34	21.77

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr8G19900_001	EnsemblPlants:GSMUA_Achr8P19900_001	EnsemblPlants:GSMUA_Achr8T19900_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TRZ3	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI00029497E5
SEG:seg	:	:	:	:	:

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr8G19900_001]

Coordinates

chr8:-:25017169..25019501

Molecular Weight (calculated)

45536.5 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.149

Length

415 amino acids

Sequence
(BLAST)

001: MKQRREVISI TDFGAVGDGK TLNTWPFKKA IYRIQHLRRR GGTLLYVPPG VWLTGSVSLT SHMTLYLARG AVIKATQACL LDTRRWPLVD PLPSYGRGRE
101: LPGRRYMSFI QGDGISDVII TGENGTIDGQ GEVWWNMWRR RSLHFTRPNL VEFKNSRDII ISNVVFQNSP FWNIHPVYCS NVVIKYVTVL APHDSPNTDG
201: IDPDSSSNVC IEDAHISTGD DLVAVKSGWD EYGIAYGRPS SGITIRRLTG SSPFSGVAIG SETSGGVENV LVENVNLYDT GIGIHIKTNV GRGGFVRNIT
301: VVNVSMNKVR KGIRIAGDVG DHPDEYFDRR AIPTVDGITI KNVWGVDVQQ PGSIQGIKNS PFTRICLSNV KLWGVAKRSA PWKCVDVSGA ALGVQPWPCS
401: ALARTISSGY CSTAF

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.