Factsheet for GSMUA_Achr11P14230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	46.83	73.46
GSMUA_Achr11P...	Banana	extracellular, vacuole	45.47	67.64
Os12t0554800-01	Rice	cytosol, extracellular	41.39	64.62
KXG29050	Sorghum	extracellular	43.81	64.3
GSMUA_Achr11P...	Banana	extracellular	52.57	63.39
TraesCS5B01G097100.2	Wheat	extracellular	42.75	63.03
TraesCS5D01G102900.1	Wheat	unclear	42.6	62.81
Os11t0658800-01	Rice	extracellular	42.3	62.36
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	42.75	61.93
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	42.45	61.49
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	42.15	61.05
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	43.35	60.55
Zm00001d023813_P001	Maize	extracellular, vacuole	41.54	59.65
HORVU5Hr1G023800.7	Barley	plastid	44.71	57.7
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	39.58	57.58
KRH37050	Soybean	extracellular, vacuole	39.27	57.52
Zm00001d048696_P001	Maize	extracellular	42.9	57.49
KRH02302	Soybean	extracellular	38.82	57.24
VIT_07s0005g00890.t01	Wine grape	extracellular	41.09	57.02
KRH12027	Soybean	extracellular, vacuole	40.48	56.9
KRH50791	Soybean	extracellular	37.92	55.9
CDY33922	Canola	extracellular	37.16	55.41
KRH69264	Soybean	extracellular	37.76	54.95
Bra037429.1-P	Field mustard	extracellular	36.71	54.73
KRG96478	Soybean	endoplasmic reticulum, extracellular	39.73	54.56
KRH31843	Soybean	extracellular	37.31	54.17
KRH68221	Soybean	extracellular	40.63	54.12
AT5G49215.1	Thale cress	extracellular, vacuole	36.56	53.9
PGSC0003DMT400018848	Potato	extracellular	37.01	53.61
Bra020656.1-P	Field mustard	extracellular, plasma membrane	37.92	53.4
Solyc06g009790.2.1	Tomato	extracellular	36.86	53.39
CDX92101	Canola	extracellular, golgi	36.56	53.19
CDY54633	Canola	extracellular	35.95	53.12
Bra022182.1-P	Field mustard	extracellular, golgi	36.25	52.98
CDY08036	Canola	cytosol, nucleus, vacuole	30.06	52.79
PGSC0003DMT400081328	Potato	extracellular	36.56	52.72
CDX74085	Canola	cytoskeleton, cytosol, vacuole	30.21	52.63
CDX82390	Canola	extracellular	35.65	52.56
Bra001642.1-P	Field mustard	vacuole	35.8	52.55
AT3G16850.1	Thale cress	vacuole	36.1	52.53
GSMUA_AchrUn_...	Banana	extracellular	31.12	52.42
AT3G06770.5	Thale cress	extracellular	35.35	52.35
CDY56436	Canola	extracellular, vacuole	37.46	52.32
CDX95899	Canola	extracellular	35.8	52.32
CDY05643	Canola	extracellular, plasma membrane, plastid	37.76	52.3
Bra001215.1-P	Field mustard	extracellular	35.05	51.67
GSMUA_Achr8P06180_001	Banana	extracellular	30.66	51.65
Solyc09g075460.2.1	Tomato	extracellular	37.01	51.04
VIT_05s0077g01740.t01	Wine grape	nucleus	18.13	50.85
CDX86247	Canola	plasma membrane, plastid	36.86	48.7
GSMUA_Achr6P14280_001	Banana	cytosol	28.55	47.01
GSMUA_Achr4P08470_001	Banana	extracellular	29.0	46.72
GSMUA_Achr10P...	Banana	cytosol	28.25	45.39
GSMUA_Achr8P19900_001	Banana	cytosol	28.25	45.06
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	27.49	44.83
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	11.78	44.32
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	28.55	42.76
GSMUA_Achr11P...	Banana	cytosol	19.34	41.03
GSMUA_Achr4P05580_001	Banana	cytosol	19.34	41.03
GSMUA_Achr11P...	Banana	cytosol	18.43	40.0
GSMUA_Achr11P...	Banana	extracellular	28.4	39.5
GSMUA_Achr11P...	Banana	mitochondrion	27.64	37.27
GSMUA_Achr3P10280_001	Banana	mitochondrion	26.43	36.53
GSMUA_Achr9P18190_001	Banana	mitochondrion	27.04	36.46
GSMUA_Achr5P22120_001	Banana	extracellular	25.83	34.76
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	25.83	34.27
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	8.91	29.35
GSMUA_Achr3P11090_001	Banana	extracellular	16.47	23.49

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:2.160.20.10	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr11G14230_001	EnsemblPlants:GSMUA_Achr11P14230_001
EnsemblPlants:GSMUA_Achr11T14230_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	InterPro:L18e/L15P_sf	UniProt:M0RS53	PFAM:PF00295
PFAM:PF17135	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
InterPro:Ribosomal_L18e/L15P	SMART:SM00710	SUPFAM:SSF51126	SUPFAM:SSF52080	UniParc:UPI000296C1F0	SEG:seg

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr11G14230_001]

Coordinates

chr11:+:15285211..15299301

Molecular Weight (calculated)

72762.5 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.051

Length

662 amino acids

Sequence
(BLAST)

001: MFMVSGAEDR EQVQHSDPEA AVHEQNQPAA HLPQEFHHFH ARKGSIFFLP VGTVTDDKRV SDVPALNVTA LKFTETARAR ILKSGGECLT FDQLALRAPL
101: GQNMVLLRGP KNARKLLNTM VKLLVCRTAI QSLTYALRGG RARGRRNSSG FRVRGFFLRQ QSFTCIGFPV VFCWQHAIVI LILAVADAIE ASGSSDGYCN
201: YKHISTSRPH SVTITEFGAV GDGLTLNTVA FQNAVFYLRS FADKGGAQLY VPQGRWLTGS FNLTSHLTLF LEQDAIIIGS QDSSQWPIVE SLPSYGQGLD
301: LPGARHRSLI NGYNLTDVVI TGMASLMCDN GTIDGQGLIW WEWFSSQSLN YSRPHLLELV NCNDIVVSNL TFLNSPAWSI HPVYCRNVEI QNITIHASSD
401: SPYTNGIVPD SCSNLCIEDC SIDVGHDAIA LKSGWDNYGI SYGMPSTYIH ISKVHLQTPL GSALAFGSEM SGGISFIYVE HLHIDNSLTG INFKTTRGRG
501: GFIEDIVVSN VEMENVHEAF RFTGHCGGHP NDEYDPDALP KIKQVTLKNI VGTNISTAGF FSGIENDPFT AICLSNIALS ITSDPSNSWS CSNVSGYSES
601: EYTTIIPVLY GSISYRQLPR YCSKQWIKFV FTEDSCHQPA LFSNIAAKLG SVKTRVRLIG KT

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.