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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:
  • nucleus 1
  • plastid 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, plastid
Any Predictor:extracellular, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:extracellular
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY33922 Canola extracellular 90.38 97.3
CDY56436 Canola extracellular, vacuole 85.56 86.29
AT5G49215.1 Thale cress extracellular, vacuole 79.5 84.63
CDX86247 Canola plasma membrane, plastid 83.89 80.04
CDX74085 Canola cytoskeleton, cytosol, vacuole 58.16 73.16
CDY08036 Canola cytosol, nucleus, vacuole 57.53 72.94
KRH37050 Soybean extracellular, vacuole 61.92 65.49
KRH02302 Soybean extracellular 60.04 63.92
VIT_05s0077g01760.t01 Wine grape extracellular, vacuole 60.25 63.3
KRH12027 Soybean extracellular, vacuole 62.34 63.27
KRH50791 Soybean extracellular 59.41 63.25
CDX95899 Canola extracellular 56.9 60.04
CDX92101 Canola extracellular, golgi 57.11 60.0
CDY54633 Canola extracellular 55.65 59.38
CDX82390 Canola extracellular 55.23 58.8
GSMUA_Achr5P00100_001 Banana cytosol, extracellular, plastid 51.05 57.82
PGSC0003DMT400081328 Potato extracellular 55.02 57.3
PGSC0003DMT400018848 Potato extracellular 53.97 56.46
Solyc06g009790.2.1 Tomato extracellular 53.35 55.8
Os11t0658800-01 Rice extracellular 52.09 55.46
Os12t0554800-01 Rice cytosol, extracellular 48.95 55.19
Solyc09g075460.2.1 Tomato extracellular 55.02 54.79
TraesCS5B01G097100.2 Wheat extracellular 51.46 54.79
TraesCS5D01G102900.1 Wheat unclear 51.05 54.34
VIT_05s0077g01740.t01 Wine grape nucleus 26.78 54.24
TraesCS4D01G146700.1 Wheat extracellular, golgi, vacuole 51.67 54.05
TraesCS4A01G168800.1 Wheat extracellular, golgi, vacuole 51.26 53.61
KXG29050 Sorghum extracellular 50.42 53.44
TraesCS4B01G144700.2 Wheat extracellular, golgi, vacuole 51.05 53.39
Zm00001d023813_P001 Maize extracellular, vacuole 51.26 53.15
TraesCS5A01G090800.2 Wheat extracellular, golgi, mitochondrion, plastid 51.26 51.69
GSMUA_Achr11P... Banana extracellular, vacuole 47.28 50.79
Zm00001d048696_P001 Maize extracellular 50.0 48.38
HORVU5Hr1G023800.7 Barley plastid 51.26 47.76
CDX67875 Canola extracellular, golgi 43.93 45.85
CDY25090 Canola extracellular, golgi 43.93 45.85
CDY11403 Canola extracellular, plasma membrane 42.89 44.57
CDX76617 Canola extracellular, plasma membrane 42.68 44.35
GSMUA_Achr11P... Banana extracellular 50.63 44.08
CDY47619 Canola extracellular, vacuole 40.59 43.69
CDY03516 Canola extracellular, vacuole 40.38 43.47
CDX67513 Canola extracellular 40.59 43.4
CDY13383 Canola extracellular 40.38 43.37
CDY10898 Canola cytosol 4.6 43.14
CDY10970 Canola extracellular, vacuole 40.59 43.02
CDY69951 Canola cytosol 11.3 42.86
CDX94222 Canola extracellular 40.38 42.79
CDX68976 Canola extracellular 39.75 40.34
CDX75352 Canola extracellular 39.75 40.25
CDY10897 Canola cytosol, extracellular, peroxisome 19.87 39.75
CDY65355 Canola extracellular 39.12 39.62
CDY46115 Canola extracellular 38.91 39.32
CDY05907 Canola cytosol 35.98 39.27
CDY05885 Canola extracellular 38.08 39.22
CDY44105 Canola cytosol, nucleus, plasma membrane 37.03 39.16
CDX72404 Canola extracellular 38.7 39.11
CDY48913 Canola extracellular 38.49 39.07
CDY08113 Canola extracellular 36.82 38.6
CDY39678 Canola extracellular 38.49 38.49
CDY20264 Canola extracellular 38.28 38.28
CDY70893 Canola cytosol 28.66 38.27
CDX71719 Canola mitochondrion 12.97 37.8
GSMUA_Achr11P... Banana cytosol 52.3 37.76
CDY69255 Canola cytosol 29.29 37.23
CDY08095 Canola extracellular, plasma membrane 38.28 36.97
CDY53228 Canola extracellular 8.37 35.71
CDY27797 Canola extracellular, mitochondrion, plastid 35.98 34.33
CDY41934 Canola extracellular, mitochondrion, plastid 35.98 34.26
CDX96676 Canola extracellular, golgi, plastid 35.15 33.14
CDX83782 Canola extracellular, golgi, plastid 35.15 33.14
CDY10899 Canola cytosol 4.18 20.83
CDY02392 Canola extracellular, plasma membrane, vacuole 20.29 20.29
CDY12962 Canola extracellular, plasma membrane, vacuole 20.29 20.29
CDY11375 Canola mitochondrion 20.71 19.53
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078F1D9EnsemblPlants:CDY05643ProteinID:CDY05643ProteinID:CDY05643.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00120628001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295PFAM:PF12708
PANTHER:PTHR31339PANTHER:PTHR31339:SF15InterPro:Pectate_lyase_SF_protInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EE555ESEG:seg::::
Description
BnaC02g38940D
Coordinates
chrLK031963:-:481486..484077
Molecular Weight (calculated)
51926.2 Da
IEP (calculated)
5.496
GRAVY (calculated)
0.010
Length
478 amino acids
Sequence
(BLAST)
001: MPVSTCSYYV FFEAYKSNPS IVLVSRFLGL RHFDGSVALV LLLALSCLIQ SHGAGNVCDL GRRPNTRPHS VSILEFGAVG DGKTLNTIAF QNAVFYLKSF
101: ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKDAVILASQ DPLHWQVVDP LPSYGRGIDL PGRRYMSLIN GYMLHDVVVT GDNGTIDGQG LLWWDRFNSH
201: SLKHSRPHLV EFVSSENVIV SNLTFLNAPA YTIHSVYCSH VYINKVTATT SPESPYTIGI VPDSSDNVCI QDSSINMGYD AISLKSGWDE YGISYARPTA
301: NVQIQNVYLQ AASGSSISFG SEMSGGISDV MVRDAHIRNS VSGVAFRTTK GRGGYMKEID VSNINMVNVG TAFLANGSFG THPDSGFDAN AYPLVSHIML
401: HDIVGENISI AGEFFGTKES PFTSVLLSNI SLSMSSDSPD DDDSWRCSYV EGSSESVVPE PCFELKSFES SYGRAVAL
Best Arabidopsis Sequence Match ( AT5G49215.1 )
(BLAST)
001: MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL
101: FLEKDAVILA SQDPSHWQVT DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH LVEFVSAENV IVSNLTFLNA
201: PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS
301: DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS
401: NISLSIKNSA SPADSWQCSY VDGSSEFVVP EPCLELKSFD SYYGRAEAL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.