Factsheet for Os12t0554800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G102900.1	Wheat	unclear	84.2	79.51
TraesCS5B01G097100.2	Wheat	extracellular	83.49	78.84
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	84.91	75.95
Zm00001d023813_P001	Maize	extracellular, vacuole	79.72	73.32
Os11t0658800-01	Rice	extracellular	76.65	72.38
HORVU5Hr1G023800.7	Barley	plastid	83.73	69.2
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	66.98	67.3
GSMUA_Achr11P...	Banana	extracellular, vacuole	61.08	58.2
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	60.61	56.48
KRH37050	Soybean	extracellular, vacuole	59.43	55.75
VIT_07s0005g00890.t01	Wine grape	extracellular	61.32	54.51
KRH50791	Soybean	extracellular	57.55	54.34
PGSC0003DMT400018848	Potato	extracellular	58.49	54.27
PGSC0003DMT400081328	Potato	extracellular	58.49	54.03
KRH02302	Soybean	extracellular	57.08	53.9
Solyc06g009790.2.1	Tomato	extracellular	57.78	53.61
CDY33922	Canola	extracellular	56.13	53.6
KRH12027	Soybean	extracellular, vacuole	59.43	53.5
CDX74085	Canola	cytoskeleton, cytosol, vacuole	47.88	53.42
CDY08036	Canola	cytosol, nucleus, vacuole	47.41	53.32
GSMUA_Achr11P...	Banana	extracellular	68.87	53.19
Bra037429.1-P	Field mustard	extracellular	55.66	53.15
KRH31843	Soybean	extracellular	57.08	53.07
Bra022182.1-P	Field mustard	extracellular, golgi	56.6	52.98
AT3G16850.1	Thale cress	vacuole	56.84	52.97
VIT_05s0077g01740.t01	Wine grape	nucleus	29.48	52.97
KRH69264	Soybean	extracellular	56.6	52.75
CDX92101	Canola	extracellular, golgi	56.6	52.75
CDX95899	Canola	extracellular	56.13	52.54
AT5G49215.1	Thale cress	extracellular, vacuole	55.42	52.34
Solyc09g075460.2.1	Tomato	extracellular	58.96	52.08
KRG96478	Soybean	endoplasmic reticulum, extracellular	59.2	52.07
CDY54633	Canola	extracellular	54.48	51.56
CDX82390	Canola	extracellular	54.48	51.45
KRH68221	Soybean	extracellular	60.14	51.31
Bra001642.1-P	Field mustard	vacuole	54.48	51.22
Bra020656.1-P	Field mustard	extracellular, plasma membrane	55.9	50.43
CDY56436	Canola	extracellular, vacuole	56.37	50.42
Os03t0833800-01	Rice	extracellular	56.6	50.42
AT3G06770.5	Thale cress	extracellular	53.07	50.34
Bra001215.1-P	Field mustard	extracellular	53.3	50.33
CDY05643	Canola	extracellular, plasma membrane, plastid	55.19	48.95
CDX86247	Canola	plasma membrane, plastid	55.66	47.11
Os01t0618900-01	Rice	cytosol, extracellular	36.32	46.81
Os07t0245200-01	Rice	plasma membrane	48.35	45.96
Os02t0256100-01	Rice	extracellular	45.28	43.34
Os05t0587000-01	Rice	extracellular	45.52	43.08
GSMUA_Achr11P...	Banana	cytosol	64.62	41.39
Os06t0106800-01	Rice	extracellular	45.52	39.79
Os08t0107300-00	Rice	extracellular, mitochondrion	44.58	39.21
Os03t0124900-01	Rice	extracellular	41.04	37.99
Os02t0781000-01	Rice	extracellular	24.76	36.84
Os09t0439400-01	Rice	plastid	40.33	32.51
Os09t0487600-01	Rice	extracellular	23.82	22.1

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:BAF30012.1	ProteinID:BAT17595.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EnsemblPlantsGene:Os12g0554800	EnsemblPlants:Os12t0554800-01	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF11
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q0IMQ3	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0000DD9F0D	SEG:seg	:	:	:	:

Description

Similar to Polygalacturonase-like protein. (Os12t0554800-01)

Coordinates

chr12:+:22573093..22576210

Molecular Weight (calculated)

45854.1 Da

IEP (calculated)

5.905

GRAVY (calculated)

0.007

Length

424 amino acids

Sequence
(BLAST)

001: RRPRPRPHSV TISEFGAVGD GVTVNTLPFQ NAIFYLRSFA DKGGAQLYVP RGRWLTGSFN LTSHLTIFLE KDAVIIGAKE VSEWPIVEPL PSYGQGIDLP
101: GARHRSLING HNVTDVVITG NNGIIDGQGL TWWNWFRSNK LNYSRPHLVE FVDSEDIVIS NLTLLNSPAW GIHPVFCSNV MVHDVTIRTS LDAPLTDGIV
201: PDSCSNMCIE DSSISVAHDA ISLKSGWDNY GITIGRPASD IHISRVDLQA SLGAALAFGS EMSGGISDIH VDHLNIHGSS RGILFKTAPG RGGYIRDVVI
301: SDVQMEDVNV AIKFTGDWST HPDNHFDPSA LPMINRITLK NMVGTNISVA GVLSGINGDP FTNICLSNIS FSLADSTQSS SWSCSNISGY SELVFPEPCP
401: DLHHSSSNSS ICFSLLTYHA LAAA

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.