Factsheet for VIT_05s0077g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01740.t01	Wine grape	nucleus	50.33	97.03
KRH50791	Soybean	extracellular	74.07	75.06
KRH37050	Soybean	extracellular, vacuole	74.51	75.0
KRH02302	Soybean	extracellular	73.63	74.61
KRH12027	Soybean	extracellular, vacuole	73.85	71.34
VIT_07s0005g00890.t01	Wine grape	extracellular	70.77	67.51
Bra037429.1-P	Field mustard	extracellular	63.74	65.32
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	59.56	64.22
CDY08036	Canola	cytosol, nucleus, vacuole	53.19	64.19
CDY33922	Canola	extracellular	62.2	63.74
AT3G06770.5	Thale cress	extracellular	61.98	63.09
CDX74085	Canola	cytoskeleton, cytosol, vacuole	52.53	62.89
AT5G49215.1	Thale cress	extracellular, vacuole	61.98	62.81
Bra001215.1-P	Field mustard	extracellular	60.66	61.47
CDY56436	Canola	extracellular, vacuole	63.96	61.39
CDY54633	Canola	extracellular	59.78	60.71
Bra022182.1-P	Field mustard	extracellular, golgi	60.44	60.71
Os12t0554800-01	Rice	cytosol, extracellular	56.48	60.61
CDX82390	Canola	extracellular	59.78	60.58
AT3G16850.1	Thale cress	vacuole	60.44	60.44
CDX92101	Canola	extracellular, golgi	60.44	60.44
Bra020656.1-P	Field mustard	extracellular, plasma membrane	62.42	60.43
CDY05643	Canola	extracellular, plasma membrane, plastid	63.3	60.25
Bra001642.1-P	Field mustard	vacuole	59.56	60.09
CDX95899	Canola	extracellular	59.78	60.04
Os11t0658800-01	Rice	extracellular	59.12	59.91
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	58.46	58.21
CDX86247	Canola	plasma membrane, plastid	63.74	57.88
TraesCS5D01G102900.1	Wheat	unclear	56.7	57.46
TraesCS5B01G097100.2	Wheat	extracellular	56.7	57.46
KXG29050	Sorghum	extracellular	56.92	57.43
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	57.58	57.33
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	57.36	57.11
GSMUA_Achr11P...	Banana	extracellular, vacuole	55.82	57.08
Zm00001d023813_P001	Maize	extracellular, vacuole	57.14	56.4
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	57.14	54.85
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	54.07	52.79
HORVU5Hr1G023800.7	Barley	plastid	58.68	52.05
GSMUA_Achr11P...	Banana	extracellular	61.98	51.37
Zm00001d048696_P001	Maize	extracellular	55.6	51.21
VIT_13s0139g00110.t01	Wine grape	cytosol	9.89	46.88
VIT_02s0025g01330.t01	Wine grape	extracellular	45.71	46.53
VIT_00s2630g00010.t01	Wine grape	cytosol	6.59	45.45
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	46.59	44.26
VIT_02s0025g00260.t01	Wine grape	extracellular	46.15	43.75
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	45.93	40.43
GSMUA_Achr11P...	Banana	cytosol	57.58	39.58
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	40.66	37.53
VIT_16s0050g01120.t01	Wine grape	cytosol	14.07	34.22
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	23.08	21.83
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	44.4	19.22

Protein Annotations

EntrezGene:100241496	wikigene:100241496	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CCB48014	ProteinID:CCB48014.1
UniProt:F6H6V7	EMBL:FN595246	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100241496	wikigene:LOC100241496	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF15	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002109ABB	ArrayExpress:VIT_05s0077g01760	EnsemblPlantsGene:VIT_05s0077g01760
EnsemblPlants:VIT_05s0077g01760.t01	RefSeq:XP_002273305	RefSeq:XP_002273305.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:1384654..1388778

Molecular Weight (calculated)

49030.8 Da

IEP (calculated)

5.139

GRAVY (calculated)

0.029

Length

455 amino acids

Sequence
(BLAST)

001: MLLPLLVILV LSNAVESNGQ ERGGQCTNSL TLDPRPHSVS ILEFGAVGDG KTLNTIAFQN AIFYLKSFAD KGGAQLYVPP GKWLTGSFNL TSHLTLFLER
101: GAVILGSQDP SHWEVIEPLP SYGRGIELPG GRYRSLINGY MLRDVVITGD NGTINGQGSV WWDWFTSHSL NYSRPHLVEF LASTNVVVSN LTFLNAPAYN
201: IHPVYCSNVR VQNISVYAPP ESPYTVGIVP DSSDSTCIED CSIAMGHDAI ALKSGWDEYG IAYGRPTTNV HIRRVNLQSS SGSSLAFGSE MSGGISNVCV
301: EQVHLYNSFS GIEFRTTKGR GGYIQEIIIS DVAMENIHTA FSATGQIGSH PDDHFDPNAL PVLDHITLQN VIGTNITIAG SFTGIQESPF TSICLSNISL
401: STTPPASISW VCSNVSGFSQ WVFPEPCPSL ESSLLNSSST CLSRLNSSPT QTAVL

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.