Factsheet for Bra001642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82390	Canola	extracellular	98.89	99.33
Bra022182.1-P	Field mustard	extracellular, golgi	88.25	87.86
AT3G16850.1	Thale cress	vacuole	84.92	84.18
Bra037429.1-P	Field mustard	extracellular	58.76	59.68
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	60.09	59.56
KRH37050	Soybean	extracellular, vacuole	59.2	59.07
Bra001215.1-P	Field mustard	extracellular	58.54	58.8
KRH50791	Soybean	extracellular	58.09	58.35
KRH02302	Soybean	extracellular	57.87	58.13
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	53.88	57.58
KRH12027	Soybean	extracellular, vacuole	59.42	56.9
PGSC0003DMT400018848	Potato	extracellular	57.43	56.67
Solyc06g009790.2.1	Tomato	extracellular	57.43	56.67
PGSC0003DMT400081328	Potato	extracellular	56.98	55.99
Bra020656.1-P	Field mustard	extracellular, plasma membrane	58.09	55.74
Os12t0554800-01	Rice	cytosol, extracellular	51.22	54.48
Solyc09g075460.2.1	Tomato	extracellular	57.21	53.75
Zm00001d023813_P001	Maize	extracellular, vacuole	54.77	53.58
TraesCS5D01G102900.1	Wheat	unclear	52.77	53.01
TraesCS5B01G097100.2	Wheat	extracellular	52.77	53.01
VIT_05s0077g01740.t01	Wine grape	nucleus	27.72	52.97
KXG29050	Sorghum	extracellular	52.77	52.77
Os11t0658800-01	Rice	extracellular	51.88	52.12
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	52.33	51.64
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	51.66	50.98
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	51.22	50.55
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	52.77	50.21
GSMUA_Achr11P...	Banana	extracellular, vacuole	49.0	49.66
HORVU5Hr1G023800.7	Barley	plastid	52.99	46.59
Zm00001d048696_P001	Maize	extracellular	51.0	46.56
Bra003485.1-P	Field mustard	extracellular, golgi	46.78	46.07
Bra007662.1-P	Field mustard	extracellular, plasma membrane	46.12	45.22
Bra013734.1-P	Field mustard	extracellular, vacuole	44.12	44.82
GSMUA_Achr11P...	Banana	extracellular	53.22	43.72
Bra028511.1-P	Field mustard	extracellular	43.24	43.62
Bra019264.1-P	Field mustard	extracellular, vacuole	43.46	43.46
Bra011440.1-P	Field mustard	extracellular	43.9	41.77
Bra018004.1-P	Field mustard	cytosol	39.69	40.96
Bra037005.1-P	Field mustard	extracellular	43.24	40.88
Bra018023.1-P	Field mustard	extracellular	42.35	40.72
Bra007609.1-P	Field mustard	extracellular	41.91	40.21
Bra019299.1-P	Field mustard	extracellular, plasma membrane	42.13	38.54
Bra013697.1-P	Field mustard	extracellular, plasma membrane	42.13	38.54
GSMUA_Achr11P...	Banana	cytosol	52.55	35.8
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	38.8	34.52
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	37.69	33.86
Bra032138.1-P	Field mustard	cytosol	41.91	23.62
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.39	21.13
Bra007626.1-P	Field mustard	mitochondrion	25.06	19.45

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra001642	EnsemblPlants:Bra001642.1	EnsemblPlants:Bra001642.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CBR2	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF15
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI0002540ACF	:	:	:	:	:

Description

AT3G16850 (E=2e-226) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:+:17649792..17652016

Molecular Weight (calculated)

48945.8 Da

IEP (calculated)

5.852

GRAVY (calculated)

-0.022

Length

451 amino acids

Sequence
(BLAST)

001: MKIPVALVWL LAFTNVLLIR GESNDATICK DHFMLDPRPH SVSILEFGAV GDGKYLNTLA FQNAIFYLKS FADKGGAQLY VPPGKWLTGS FNLTSHLTLF
101: LEKGATILAS PDQSHWDTVS SLPSYGRGKR YRSLINGDNL LDVVITGDNG TFDGQGAVWW EWFESGTLNY SRPHIIELVS SKNILISNLT FLNAPSVNIH
201: PVYCSHVHIR KVLIETTVDS PYVLGVVPDS SDNVCIEDST INVGHDTISL KSGWDQYGIN YNRPTTNVHL RNLSLKSPTG AGISFGSEMS GGISDVTVEL
301: LTIQSSHVGV AFRTTRGRGG YIRNITISDV ILSRVDTAIV ADGHTGSHAD DKYDRDALPV VTRVLMRNFT GEGIGLAGKF TGIGESPFTS ICLSDIHLQT
401: SSESWVCSNV SGFSDDVTPE PCQELMSSPS SCFAGGGIYG VDTAARGYYS W

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.