Factsheet for VIT_05s0077g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	97.03	50.33
KRH50791	Soybean	extracellular	69.49	36.53
KRH02302	Soybean	extracellular	68.22	35.86
KRH37050	Soybean	extracellular, vacuole	68.64	35.84
KRH12027	Soybean	extracellular, vacuole	67.8	33.97
CDY08036	Canola	cytosol, nucleus, vacuole	52.12	32.63
CDX74085	Canola	cytoskeleton, cytosol, vacuole	51.27	31.84
VIT_07s0005g00890.t01	Wine grape	extracellular	62.71	31.03
GSMUA_Achr11P...	Banana	extracellular, vacuole	56.78	30.11
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	53.39	29.86
Os12t0554800-01	Rice	cytosol, extracellular	52.97	29.48
Bra037429.1-P	Field mustard	extracellular	54.24	28.83
AT3G06770.5	Thale cress	extracellular	53.81	28.41
AT5G49215.1	Thale cress	extracellular, vacuole	53.81	28.29
CDY54633	Canola	extracellular	53.39	28.12
CDX82390	Canola	extracellular	52.97	27.84
Bra001642.1-P	Field mustard	vacuole	52.97	27.72
CDY33922	Canola	extracellular	52.12	27.7
Os11t0658800-01	Rice	extracellular	52.54	27.62
TraesCS5D01G102900.1	Wheat	unclear	52.54	27.62
CDY56436	Canola	extracellular, vacuole	55.08	27.43
TraesCS5B01G097100.2	Wheat	extracellular	52.12	27.39
Bra001215.1-P	Field mustard	extracellular	52.12	27.39
AT3G16850.1	Thale cress	vacuole	52.54	27.25
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	52.54	27.13
Bra022182.1-P	Field mustard	extracellular, golgi	51.69	26.93
KXG29050	Sorghum	extracellular	51.27	26.83
CDX92101	Canola	extracellular, golgi	51.69	26.81
CDY05643	Canola	extracellular, plasma membrane, plastid	54.24	26.78
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	51.69	26.7
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	51.27	26.48
Bra020656.1-P	Field mustard	extracellular, plasma membrane	52.54	26.38
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	52.97	26.37
CDX95899	Canola	extracellular	50.42	26.27
Zm00001d023813_P001	Maize	extracellular, vacuole	50.42	25.81
CDX86247	Canola	plasma membrane, plastid	53.81	25.35
HORVU5Hr1G023800.7	Barley	plastid	54.66	25.15
GSMUA_Achr11P...	Banana	extracellular	57.63	24.77
Zm00001d048696_P001	Maize	extracellular	49.58	23.68
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	43.22	21.89
VIT_02s0025g01330.t01	Wine grape	extracellular	41.1	21.7
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	39.41	19.42
VIT_02s0025g00260.t01	Wine grape	extracellular	38.56	18.96
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	39.83	18.18
GSMUA_Achr11P...	Banana	cytosol	50.85	18.13
VIT_16s0050g01120.t01	Wine grape	cytosol	13.98	17.65
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	35.17	16.84
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	18.22	8.94
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	37.29	8.37
VIT_00s2630g00010.t01	Wine grape	cytosol	0.85	3.03
VIT_13s0139g00110.t01	Wine grape	cytosol	0.42	1.04

Protein Annotations

EntrezGene:100855314	wikigene:100855314	Gene3D:2.160.20.10	MapMan:35.1	ProteinID:CCB48012	ProteinID:CCB48012.1
UniProt:F6H6V5	EMBL:FN595246	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100855314	wikigene:LOC100855314	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF15	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002109AB9	ArrayExpress:VIT_05s0077g01740	EnsemblPlantsGene:VIT_05s0077g01740
EnsemblPlants:VIT_05s0077g01740.t01	RefSeq:XP_003631950	RefSeq:XP_003631950.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:1370592..1377054

Molecular Weight (calculated)

25156.6 Da

IEP (calculated)

4.587

GRAVY (calculated)

0.124

Length

236 amino acids

Sequence
(BLAST)

001: MVFISLLILI NNSSDSTCIE DCSIAMGHDA IALKSGWDEY GIAYGRPTTN VHIRRVNLQS SSGSSLAFGS EMSGGISNVC VEQVHLYNSF SGIEFRTTKG
101: RGGYIQEIII SDVAMENIHT AFSATGQIGS HPDDHFDPNA LPVLDHITLQ NVIGTNITIA GSFTGIQESP FTSICLSNIS LSTTPPASIS WVCSNVSGFS
201: QWVFPEPCPS LESSLLNSSS TCLSRLNSSP TQTAVL

Best Arabidopsis Sequence Match ( AT3G06770.1 )
(BLAST)

001: MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF
101: TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR
201: PTENVHIRNV YLRGASGSSI SFGSEMSGGI SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH
301: IRLSNISGEN IGIAGKLFGI KESPFSSVTL SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.