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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:extracellular, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:extracellular
Predotar:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037429.1-P Field mustard extracellular 87.23 98.42
CDY56436 Canola extracellular, vacuole 88.22 93.25
CDY33922 Canola extracellular 78.04 88.06
AT5G49215.1 Thale cress extracellular, vacuole 76.45 85.3
CDY05643 Canola extracellular, plasma membrane, plastid 80.04 83.89
CDX74085 Canola cytoskeleton, cytosol, vacuole 55.69 73.42
CDY08036 Canola cytosol, nucleus, vacuole 55.09 73.21
KRH37050 Soybean extracellular, vacuole 57.68 63.94
VIT_05s0077g01760.t01 Wine grape extracellular, vacuole 57.88 63.74
KRH02302 Soybean extracellular 56.49 63.03
KRH50791 Soybean extracellular 56.49 63.03
KRH12027 Soybean extracellular, vacuole 58.28 62.0
CDX92101 Canola extracellular, golgi 53.89 59.34
CDX95899 Canola extracellular 53.49 59.16
CDY54633 Canola extracellular 52.69 58.93
CDX82390 Canola extracellular 52.3 58.35
PGSC0003DMT400081328 Potato extracellular 52.89 57.73
PGSC0003DMT400018848 Potato extracellular 52.1 57.11
GSMUA_Achr5P00100_001 Banana cytosol, extracellular, plastid 47.9 56.87
Solyc06g009790.2.1 Tomato extracellular 51.5 56.46
Os12t0554800-01 Rice cytosol, extracellular 47.11 55.66
Solyc09g075460.2.1 Tomato extracellular 52.89 55.21
TraesCS5B01G097100.2 Wheat extracellular 49.3 55.01
Os11t0658800-01 Rice extracellular 49.3 55.01
TraesCS4D01G146700.1 Wheat extracellular, golgi, vacuole 49.9 54.7
KXG29050 Sorghum extracellular 48.9 54.32
TraesCS4A01G168800.1 Wheat extracellular, golgi, vacuole 49.5 54.27
TraesCS5D01G102900.1 Wheat unclear 48.5 54.12
TraesCS4B01G144700.2 Wheat extracellular, golgi, vacuole 49.3 54.05
VIT_05s0077g01740.t01 Wine grape nucleus 25.35 53.81
Zm00001d023813_P001 Maize extracellular, vacuole 48.5 52.71
TraesCS5A01G090800.2 Wheat extracellular, golgi, mitochondrion, plastid 49.1 51.9
GSMUA_Achr11P... Banana extracellular, vacuole 44.31 49.89
Zm00001d048696_P001 Maize extracellular 48.3 48.99
HORVU5Hr1G023800.7 Barley plastid 48.9 47.76
CDY10898 Canola cytosol 4.59 45.1
CDY25090 Canola extracellular, golgi 40.92 44.76
CDX67875 Canola extracellular, golgi 40.92 44.76
CDY11403 Canola extracellular, plasma membrane 40.12 43.7
CDY03516 Canola extracellular, vacuole 38.52 43.47
CDY47619 Canola extracellular, vacuole 38.52 43.47
GSMUA_Achr11P... Banana extracellular 47.31 43.17
CDX76617 Canola extracellular, plasma membrane 39.52 43.04
CDY69951 Canola cytosol 10.78 42.86
CDX94222 Canola extracellular 38.52 42.79
CDY10970 Canola extracellular, vacuole 38.52 42.79
CDY13383 Canola extracellular 37.72 42.47
CDX67513 Canola extracellular 37.72 42.28
CDY65355 Canola extracellular 37.72 40.04
CDX68976 Canola extracellular 37.33 39.7
CDY05907 Canola cytosol 34.53 39.5
CDY48913 Canola extracellular 37.13 39.49
CDX75352 Canola extracellular 37.13 39.41
CDY05885 Canola extracellular 36.13 39.01
CDY08113 Canola extracellular 35.33 38.82
CDY44105 Canola cytosol, nucleus, plasma membrane 34.93 38.72
CDY39678 Canola extracellular 36.93 38.7
CDY10897 Canola cytosol, extracellular, peroxisome 18.36 38.49
CDY20264 Canola extracellular 36.73 38.49
CDY46115 Canola extracellular 36.33 38.48
CDX72404 Canola extracellular 36.33 38.48
CDY70893 Canola cytosol 27.35 38.27
CDY69255 Canola cytosol 27.94 37.23
GSMUA_Achr11P... Banana cytosol 48.7 36.86
CDY08095 Canola extracellular, plasma membrane 36.13 36.57
CDY53228 Canola extracellular 7.98 35.71
CDX71719 Canola mitochondrion 11.38 34.76
CDY27797 Canola extracellular, mitochondrion, plastid 33.93 33.93
CDY41934 Canola extracellular, mitochondrion, plastid 33.93 33.86
CDX83782 Canola extracellular, golgi, plastid 33.13 32.74
CDX96676 Canola extracellular, golgi, plastid 33.13 32.74
CDY02392 Canola extracellular, plasma membrane, vacuole 19.56 20.5
CDY12962 Canola extracellular, plasma membrane, vacuole 19.56 20.5
CDY11375 Canola mitochondrion 19.56 19.33
CDY10899 Canola cytosol 3.59 18.75
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078DB21EnsemblPlants:CDX86247ProteinID:CDX86247ProteinID:CDX86247.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00144351001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295PANTHER:PTHR31339
PANTHER:PTHR31339:SF15InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126UniParc:UPI0004EEF5DASEG:seg
Description
BnaA06g29640D
Coordinates
chrLK031845:-:584274..586696
Molecular Weight (calculated)
54918.7 Da
IEP (calculated)
5.641
GRAVY (calculated)
-0.027
Length
501 amino acids
Sequence
(BLAST)
001: MELYHTIKIN NSSFSIYHLY SLLNQKNNQE NSLVSVLFLS VRFLTAFFAI TNKDAMFCQV ALVLLLALSC LIQSNGAGNV CDLGRRPSSR PHSVSILEFG
101: AVGDGKTLNT LAFQNAVFYL KSFADKGGAQ LYVPPGRWLT GSFNLTSHLT LFLEKDAVIL ASQDPSHWQV ADPLPSYGRG IDLPGKRYMS LINGYMLHDV
201: VVTGDNGTID GQGLFWWDRF NSHSLKYSRP HLVEFVSSEN VIVSNITFLN APEYTIHSVY CSHVYIHRVT ANTSPESPYT VGIVPDSSDN VCIQDSTINM
301: GYDAISLKSG WDEYGISYAR PTANVQIRGV HLRAASGSSI SFGSEMSGGI SDVVVLDAYM HNSLSGIAFR TTKGRGGYIK EIDVSNIHMV NVGTAFLANG
401: SFRTHPDSGF DENAFPLVSH IRLHDIVGEN ISIAGDFFGT EESPFTSVVL SNISLSMTNS GSPDDDSWRC LYVEGSSESV VPEPCYELRS YESSYGRAEA
501: L
Best Arabidopsis Sequence Match ( AT5G49215.2 )
(BLAST)
001: MPVALVLLLT LSSVILINGR SYGVGNICDR GRRPSERPHS VKITDFGAVG DGKTLNTLAF QNAVFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL
101: EKDAVILASQ DPSHWQVTDA LPSYGRGIDL PGKRYMSLIN GDMLHDVVVT GDNGTIDGQG LVWWDRFNSH SLEYSRPHLV EFVSAENVIV SNLTFLNAPA
201: YTIHSVYCRN LYIHRVTANT CPESPYTIGI VPDSSENVCI QESSINMGYD AISLKSGCDE YGLSYARPTA NVQIRNVYLR AASGSSISFG SEMSGGISDV
301: EVSDAHIHNS LSGIAFRTTN GRGGYIKEID ISNIHMVNVG TAFLANGSFG THPDSGFDEN AYPLVSHIRL HDIVGENIST AGYFFGTKES PFTSILLSNI
401: SLSIKNSASP ADSWQCSYVD GSSEFVVPEP CLELKSFDSY YGRAEAL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.