CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	78.43	19.9
CDY70893	Canola	cytosol	96.08	13.69
CDY69255	Canola	cytosol	96.08	13.03
CDY69951	Canola	cytosol	31.37	12.7
TraesCS7A01G019900.1	Wheat	cytosol	66.67	12.69
TraesCS7A01G019500.1	Wheat	cytosol	64.71	12.31
CDY44105	Canola	cytosol, nucleus, plasma membrane	100.0	11.28
Zm00001d018548_P001	Maize	cytosol	45.1	9.91
EER89047	Sorghum	extracellular, vacuole	80.39	8.28
CDY05907	Canola	cytosol	70.59	8.22
Zm00001d010681_P001	Maize	cytosol	45.1	8.13
GSMUA_Achr11P...	Banana	extracellular	74.51	7.98
CDY08113	Canola	extracellular	70.59	7.89
CDY65355	Canola	extracellular	72.55	7.84
Os06t0106800-01	Rice	extracellular	74.51	7.84
CDY05885	Canola	extracellular	70.59	7.76
CDY48913	Canola	extracellular	70.59	7.64
Os03t0124900-01	Rice	extracellular	68.63	7.64
Zm00001d035899_P001	Maize	extracellular	72.55	7.61
EER95599	Sorghum	extracellular	66.67	7.34
CDY39678	Canola	extracellular	68.63	7.32
CDY20264	Canola	extracellular	68.63	7.32
CDY08095	Canola	extracellular, plasma membrane	70.59	7.27
TraesCS7D01G016300.2	Wheat	extracellular	68.63	7.16
Zm00001d027441_P001	Maize	plasma membrane	64.71	7.13
TraesCS5A01G513600.1	Wheat	extracellular	60.78	6.87
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	68.63	6.72
TraesCSU01G066000.1	Wheat	golgi, unclear	68.63	6.65
TraesCS4B01G344700.1	Wheat	extracellular	62.75	6.58
GSMUA_Achr11P...	Banana	cytosol	39.22	6.56
GSMUA_Achr11P...	Banana	cytosol	39.22	6.41
GSMUA_Achr4P05580_001	Banana	cytosol	37.25	6.09
CDY08036	Canola	cytosol, nucleus, vacuole	37.25	5.04
CDY11403	Canola	extracellular, plasma membrane	45.1	5.0
CDY33922	Canola	extracellular	43.14	4.95
CDY56436	Canola	extracellular, vacuole	45.1	4.85
CDX67875	Canola	extracellular, golgi	43.14	4.8
CDY25090	Canola	extracellular, golgi	43.14	4.8
CDX74085	Canola	cytoskeleton, cytosol, vacuole	35.29	4.74
CDX94222	Canola	extracellular	41.18	4.66
CDY10970	Canola	extracellular, vacuole	41.18	4.66
CDY05643	Canola	extracellular, plasma membrane, plastid	43.14	4.6
CDX86247	Canola	plasma membrane, plastid	45.1	4.59
CDX76617	Canola	extracellular, plasma membrane	41.18	4.57
CDY47619	Canola	extracellular, vacuole	39.22	4.5
CDY03516	Canola	extracellular, vacuole	39.22	4.5
CDY13383	Canola	extracellular	39.22	4.49
CDX67513	Canola	extracellular	39.22	4.47
CDY46115	Canola	extracellular	41.18	4.44
CDY27797	Canola	extracellular, mitochondrion, plastid	43.14	4.39
CDY41934	Canola	extracellular, mitochondrion, plastid	43.14	4.38
CDX96676	Canola	extracellular, golgi, plastid	43.14	4.34
CDX83782	Canola	extracellular, golgi, plastid	43.14	4.34
CDX72404	Canola	extracellular	39.22	4.23
CDX68976	Canola	extracellular	37.25	4.03
CDX75352	Canola	extracellular	37.25	4.03
CDY54633	Canola	extracellular	33.33	3.79
CDX92101	Canola	extracellular, golgi	33.33	3.74
CDX82390	Canola	extracellular	31.37	3.56
CDX95899	Canola	extracellular	29.41	3.31
TraesCS7A01G019700.1	Wheat	cytosol	7.84	3.25
CDY02392	Canola	extracellular, plasma membrane, vacuole	15.69	1.67
CDY12962	Canola	extracellular, plasma membrane, vacuole	15.69	1.67
CDY11375	Canola	mitochondrion	13.73	1.38
KRH33610	Soybean	plastid	3.92	1.11
CDY10897	Canola	cytosol, extracellular, peroxisome	1.96	0.42
CDY10899	Canola	cytosol	0.0	0.0
CDY53228	Canola	extracellular	0.0	0.0
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	0.0	0.0
CDX71719	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY10898	EnsemblPlantsGene:GSBRNA2T00048802001	Gene3D:2.160.20.10	InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	ProteinID:CDY10898	ProteinID:CDY10898.1	SUPFAM:SSF51126	UniParc:UPI0004EF342B
UniProt:A0A078FFN2	MapMan:50.3.2	:	:	:	:

Description

BnaC01g15130DBnaC01g15130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFN2]

Coordinates

chrLK032007:+:755737..755960

Molecular Weight (calculated)

5614.9 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.018

Length

51 amino acids

Sequence
(BLAST)

1: MSGGIEDVRA EDIVAINSES GIRIKTAIGR GGYVKDVYVR GMTMQTMKYV F

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.