Factsheet for TraesCS7D01G016300.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G066000.1	Wheat	golgi, unclear	94.48	87.83
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	93.05	87.33
Os06t0106800-01	Rice	extracellular	76.28	76.91
Zm00001d035899_P001	Maize	extracellular	75.26	75.72
EER89047	Sorghum	extracellular, vacuole	74.23	73.33
CDY69951	Canola	cytosol	18.4	71.43
GSMUA_Achr4P05580_001	Banana	cytosol	45.19	70.83
CDY10898	Canola	cytosol	7.16	68.63
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	26.99	65.67
CDY70893	Canola	cytosol	44.38	60.61
Bra007609.1-P	Field mustard	extracellular	58.08	60.43
CDY65355	Canola	extracellular	58.28	60.38
CDY48913	Canola	extracellular	58.08	60.3
PGSC0003DMT400055769	Potato	extracellular	57.87	59.33
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	57.87	59.08
PGSC0003DMT400032104	Potato	extracellular	58.28	59.01
Solyc01g094970.2.1	Tomato	extracellular	49.08	58.97
CDY69255	Canola	cytosol	45.19	58.78
VIT_02s0025g00260.t01	Wine grape	extracellular	57.67	58.75
Solyc05g049980.2.1	Tomato	extracellular	58.08	58.44
KRH59960	Soybean	nucleus	58.69	58.33
Solyc08g081480.2.1	Tomato	extracellular	57.46	58.18
KRH41230	Soybean	nucleus	58.49	57.89
KRH00832	Soybean	nucleus	57.26	57.85
KRH40394	Soybean	extracellular, nucleus	57.06	57.64
KRH48075	Soybean	extracellular	56.65	57.47
PGSC0003DMT400094734	Potato	cytosol	12.27	57.14
PGSC0003DMT400000538	Potato	extracellular	55.21	56.84
KRH06594	Soybean	mitochondrion	57.06	56.82
AT4G23500.1	Thale cress	extracellular, plasma membrane	57.26	56.57
Bra019299.1-P	Field mustard	extracellular, plasma membrane	56.44	55.98
Bra013697.1-P	Field mustard	extracellular, plasma membrane	56.44	55.98
KRH48076	Soybean	extracellular	54.19	55.91
CDY44105	Canola	cytosol, nucleus, plasma membrane	51.12	55.31
AT3G61490.4	Thale cress	cytosol, plastid	56.85	47.2
TraesCS7D01G320900.1	Wheat	plastid	43.76	44.12
TraesCS3D01G230000.1	Wheat	extracellular	40.49	44.0
TraesCS5D01G102900.1	Wheat	unclear	37.42	40.76
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	37.63	40.26
TraesCS5D01G513600.1	Wheat	plastid	42.94	39.55
TraesCS6D01G320600.1	Wheat	mitochondrion	39.67	39.19
TraesCS5D01G219200.1	Wheat	plastid	41.31	38.04
CDY10899	Canola	cytosol	7.36	37.5
KRH33610	Soybean	plastid	9.82	26.67
Solyc06g030520.1.1	Tomato	cytosol	5.93	25.44
PGSC0003DMT400065330	Potato	nucleus	9.2	21.95
TraesCS3D01G387300.1	Wheat	unclear	19.63	21.15
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	19.63	21.01

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7D01G016300	EnsemblPlants:TraesCS7D01G016300.2	SEG:seg

Description

No Description!

Coordinates

chr7D:+:7171309..7173424

Molecular Weight (calculated)

51877.7 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.053

Length

489 amino acids

Sequence
(BLAST)

001: MASPQVPPLL LHVLPFLCAV LLLAGTAAAR RHAPPQAGAA GQSTYTAPSC REHTASLLDF GGVGDGNTSN TAAFRKAVEH LSQYSGEGGG GGMLYVPAGR
101: WLTAPFNLTS HFTLFLHADA VILGTQDVTQ WPVIDPLPSY GRGRDHAGGR YASLVSGSNL TDVVITGNNG TIDGQGATWW SKYKSGKLKY TRGYLIELMH
201: TDGVFISNVT LVNSPAWNIH PVYSRNIVVS GVTILAPTKS PNTDGINPDS CSQVRIEDCY VVSGDDCVAI KSGWDEYGIA VGMPSEHIVV RRLTCVSPTS
301: AVIALGSEMS GGIRDVRAED ITAIGTESAV RIKTAVGRGA YVRDVYARRM RLDGMKRVFW MTGDYKSHPD DGYDKTAVPV VENISYQDVV ATGVWKEAAR
401: MQGIQGAPFK GICMANVTAE MTKERKVSWN CADVEGVSAG VTPAPCAPLQ GTHAGSCPFP TDTLAVDQIT VQQCSYSVAP ATTSMAGTK

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.