Factsheet for TraesCSU01G066000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	extracellular, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G016300.2	Wheat	extracellular	87.83	94.48
TraesCS7A01G019700.1	Wheat	cytosol	21.86	93.5
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	88.78	89.64
TraesCS7A01G019900.1	Wheat	cytosol	44.11	86.57
TraesCS7A01G019500.1	Wheat	cytosol	43.73	85.82
Os06t0106800-01	Rice	extracellular	70.91	76.91
Zm00001d035899_P001	Maize	extracellular	70.34	76.13
EER89047	Sorghum	extracellular, vacuole	69.01	73.33
CDY69951	Canola	cytosol	17.11	71.43
GSMUA_Achr4P05580_001	Banana	cytosol	41.63	70.19
CDY10898	Canola	cytosol	6.65	68.63
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	24.71	64.68
CDY70893	Canola	cytosol	41.25	60.61
Bra007609.1-P	Field mustard	extracellular	53.99	60.43
CDY65355	Canola	extracellular	54.18	60.38
CDY48913	Canola	extracellular	53.99	60.3
PGSC0003DMT400055769	Potato	extracellular	54.18	59.75
PGSC0003DMT400032104	Potato	extracellular	54.56	59.42
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	53.99	59.29
VIT_02s0025g00260.t01	Wine grape	extracellular	53.99	59.17
Solyc08g081480.2.1	Tomato	extracellular	54.18	59.01
Solyc01g094970.2.1	Tomato	extracellular	45.63	58.97
Solyc05g049980.2.1	Tomato	extracellular	54.37	58.85
CDY69255	Canola	cytosol	42.02	58.78
KRH59960	Soybean	nucleus	54.75	58.54
KRH41230	Soybean	nucleus	54.75	58.3
PGSC0003DMT400094734	Potato	cytosol	11.6	58.1
KRH00832	Soybean	nucleus	53.23	57.85
KRH48075	Soybean	extracellular	52.85	57.68
KRH40394	Soybean	extracellular, nucleus	53.04	57.64
KRH06594	Soybean	mitochondrion	53.23	57.03
PGSC0003DMT400000538	Potato	extracellular	51.33	56.84
AT4G23500.1	Thale cress	extracellular, plasma membrane	53.04	56.36
KRH48076	Soybean	extracellular	50.76	56.33
Bra019299.1-P	Field mustard	extracellular, plasma membrane	52.28	55.78
Bra013697.1-P	Field mustard	extracellular, plasma membrane	52.28	55.78
CDY44105	Canola	cytosol, nucleus, plasma membrane	47.91	55.75
AT3G61490.4	Thale cress	cytosol, plastid	53.42	47.71
CDY10899	Canola	cytosol	6.84	37.5
KRH33610	Soybean	plastid	9.13	26.67
Solyc06g030520.1.1	Tomato	cytosol	5.51	25.44
PGSC0003DMT400065330	Potato	nucleus	8.56	21.95

Protein Annotations

EnsemblPlants:TraesCSU01G066000.1	EnsemblPlantsGene:TraesCSU01G066000	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chrUn:-:51234161..51236244

Molecular Weight (calculated)

55498.8 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.026

Length

526 amino acids

Sequence
(BLAST)

001: MFVSQPNPPF PSGFRSLLQT TETGTQISVS TLSLSRAAAA AAMASPLPFH ILCFAVLLAA TAASARRHAP PQAGAAGQST YMAPSCREHT ASLTDFGGVG
101: DGNTSNTAAF RKAVEHLSQY SGEGGGGGML YVPAGRWLTA PFNLTSHFTL FLHADAVILG TQDVAQWPVI DPLPSYGRGR DHAGGRYASL VSGSNLTDVV
201: ITGNNGTIDG QGATWWSKYK SGKLKYTRGY LIELMHTDGV FISNVTLVNS PAWNIHPVYS RNIVVSGVTI LAPTKSPNTD GINPDSCSQV RIEDCYVVSG
301: DDCVAIKSGW DEYGIAVGMP SEHIVVRRLT CVSPTSAVIA LGSEMSGGIQ DVRAEDITAI GTESAVRIKT AVGRGAYVRD VYARRMRLDG MKRVFWMTGD
401: YKSHPDDGYD KTAVPVVENI SYQDVVATGV WKEAARMQGI QGAPFKGICM ANVTAEMTKE RKVSWNCVDV EGVSAGVTPA PCAPLQGTHA GSCPFPTDTL
501: AVDKIAVQQC SYSIASPAAS SVAGTG

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.