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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69951 Canola cytosol 34.36 97.62
CDY10898 Canola cytosol 13.69 96.08
CDY69255 Canola cytosol 99.72 94.95
CDY10899 Canola cytosol 24.86 92.71
CDY44105 Canola cytosol, nucleus, plasma membrane 96.37 76.33
Bra019299.1-P Field mustard extracellular, plasma membrane 99.72 72.41
AT4G23500.1 Thale cress extracellular, plasma membrane 96.65 69.9
GSMUA_Achr4P05580_001 Banana cytosol 54.75 62.82
GSMUA_Achr11P... Banana cytosol 53.07 60.9
GSMUA_Achr11P... Banana cytosol 51.12 60.0
GSMUA_Achr3P27460_001 Banana extracellular, plastid 32.96 58.71
PGSC0003DMT400032104 Potato extracellular 75.98 56.31
Solyc08g081480.2.1 Tomato extracellular 74.58 55.28
TraesCS7A01G019900.1 Wheat cytosol 39.39 52.61
CDY05885 Canola extracellular 67.6 52.16
TraesCS7A01G019500.1 Wheat cytosol 38.83 51.87
CDY65355 Canola extracellular 66.48 50.42
CDY48913 Canola extracellular 66.2 50.32
CDY05907 Canola cytosol 60.61 49.54
CDY08095 Canola extracellular, plasma membrane 67.88 49.09
Zm00001d018548_P001 Maize cytosol 31.01 47.84
CDY08113 Canola extracellular 60.89 47.81
CDY20264 Canola extracellular 63.69 47.7
GSMUA_Achr11P... Banana extracellular 63.41 47.69
CDY39678 Canola extracellular 63.41 47.49
EER89047 Sorghum extracellular, vacuole 65.08 47.07
Os06t0106800-01 Rice extracellular 63.69 47.01
Zm00001d035899_P001 Maize extracellular 63.41 46.71
Os03t0124900-01 Rice extracellular 59.5 46.51
Zm00001d010681_P001 Maize cytosol 36.59 46.29
TraesCS5A01G513600.1 Wheat extracellular 57.82 45.9
TraesCS7D01G016300.2 Wheat extracellular 60.61 44.38
Zm00001d027441_P001 Maize plasma membrane 56.42 43.63
EER95599 Sorghum extracellular 56.42 43.63
TraesCS4B01G344700.1 Wheat extracellular 58.38 43.0
CDY53228 Canola extracellular 13.41 42.86
TraesCS7A01G019400.1 Wheat extracellular, plastid, vacuole 60.61 41.65
TraesCS7A01G019700.1 Wheat cytosol 14.25 41.46
TraesCSU01G066000.1 Wheat golgi, unclear 60.61 41.25
CDY10897 Canola cytosol, extracellular, peroxisome 26.82 40.17
CDX71719 Canola mitochondrion 18.16 39.63
CDX67875 Canola extracellular, golgi 48.6 37.99
CDY25090 Canola extracellular, golgi 48.04 37.55
CDY11403 Canola extracellular, plasma membrane 46.65 36.3
CDY08036 Canola cytosol, nucleus, vacuole 37.71 35.81
CDX74085 Canola cytoskeleton, cytosol, vacuole 37.43 35.26
CDY03516 Canola extracellular, vacuole 43.58 35.14
CDY47619 Canola extracellular, vacuole 43.58 35.14
CDY13383 Canola extracellular 43.3 34.83
CDX94222 Canola extracellular 43.85 34.81
CDY46115 Canola extracellular 45.81 34.67
CDY10970 Canola extracellular, vacuole 43.3 34.37
CDX76617 Canola extracellular, plasma membrane 44.13 34.35
CDX75352 Canola extracellular 45.25 34.32
CDX72404 Canola extracellular 44.97 34.04
CDX67513 Canola extracellular 42.46 34.0
CDX68976 Canola extracellular 44.69 33.97
CDY54633 Canola extracellular 40.5 32.37
CDX82390 Canola extracellular 39.66 31.63
CDX92101 Canola extracellular, golgi 39.94 31.43
CDX95899 Canola extracellular 39.39 31.13
CDY33922 Canola extracellular 38.55 31.08
CDY56436 Canola extracellular, vacuole 38.55 29.11
CDY05643 Canola extracellular, plasma membrane, plastid 38.27 28.66
CDX96676 Canola extracellular, golgi, plastid 40.22 28.4
CDX83782 Canola extracellular, golgi, plastid 40.22 28.4
CDY27797 Canola extracellular, mitochondrion, plastid 39.66 28.34
CDY41934 Canola extracellular, mitochondrion, plastid 39.66 28.29
GSMUA_Achr7P24560_001 Banana cytosol, nucleus, vacuole 13.69 27.84
CDX86247 Canola plasma membrane, plastid 38.27 27.35
CDY12962 Canola extracellular, plasma membrane, vacuole 24.3 18.2
CDY02392 Canola extracellular, plasma membrane, vacuole 24.02 17.99
CDY11375 Canola mitochondrion 25.14 17.75
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078JTJ9UniProt:A0A078JTJ9EnsemblPlants:CDY70893ProteinID:CDY70893
ProteinID:CDY70893.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00008198001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF7InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EE77FF:::::
Description
BnaCnng70190DBnaCnng70190D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTJ9]
Coordinates
chrLK043668:-:549..2146
Molecular Weight (calculated)
39631.4 Da
IEP (calculated)
5.085
GRAVY (calculated)
-0.245
Length
358 amino acids
Sequence
(BLAST)
001: EESDYEVIEP LPSYGRGRDT DGGRFISLLF GSNLTDVVIT GENGTIDGQG EPWWGKFKRG ELKYTRPYLI EIMHSNGIQI SNLTFLNSPS WHIHPVYSSN
101: IVIQGLTILA PVTVPNTDGI NPDSCTNTRI EDCYIVSGDD CIAVKSGWDQ YGINYGMPTK QLLIRRLTCI SPDSAVIALG SEMSGGIEDV RAEDIVAINS
201: ESGIRIKTAV GRGGYVKDVY VRGMTMKTMK YVFWMTGSYG SHPDEHYDPK ALPVIQNINY QDMVAENVTM PAQLAGITGD EFTGICISNV TITLSKKPKK
301: VLWNCTDVSG YTSGVTPEPC QLLPEKQPGT VVPCNFPEMP IPIEEVKLQR CYTRRRHM
Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)
001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.