Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10897 | Canola | cytosol, extracellular, peroxisome | 40.24 | 27.62 |
| CDY53228 | Canola | extracellular | 16.46 | 24.11 |
| CDY11375 | Canola | mitochondrion | 64.63 | 20.91 |
| CDY70893 | Canola | cytosol | 39.63 | 18.16 |
| CDX67875 | Canola | extracellular, golgi | 50.0 | 17.9 |
| CDY25090 | Canola | extracellular, golgi | 50.0 | 17.9 |
| CDY69255 | Canola | cytosol | 39.63 | 17.29 |
| CDY11403 | Canola | extracellular, plasma membrane | 48.17 | 17.17 |
| CDX76617 | Canola | extracellular, plasma membrane | 45.73 | 16.3 |
| CDY69951 | Canola | cytosol | 12.2 | 15.87 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 35.37 | 15.26 |
| CDX95899 | Canola | extracellular | 42.07 | 15.23 |
| CDX92101 | Canola | extracellular, golgi | 42.07 | 15.16 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 34.76 | 15.12 |
| CDY54633 | Canola | extracellular | 40.85 | 14.96 |
| CDX82390 | Canola | extracellular | 40.85 | 14.92 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 40.24 | 14.6 |
| CDY03516 | Canola | extracellular, vacuole | 38.41 | 14.19 |
| CDY47619 | Canola | extracellular, vacuole | 37.8 | 13.96 |
| CDY33922 | Canola | extracellular | 37.2 | 13.74 |
| CDX94222 | Canola | extracellular | 36.59 | 13.3 |
| CDY10970 | Canola | extracellular, vacuole | 35.98 | 13.08 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 37.8 | 12.97 |
| CDY46115 | Canola | extracellular | 37.2 | 12.9 |
| CDX67513 | Canola | extracellular | 34.76 | 12.75 |
| CDY65355 | Canola | extracellular | 36.59 | 12.71 |
| CDX75352 | Canola | extracellular | 36.59 | 12.71 |
| CDX72404 | Canola | extracellular | 36.59 | 12.69 |
| CDX68976 | Canola | extracellular | 35.98 | 12.53 |
| CDY48913 | Canola | extracellular | 35.98 | 12.53 |
| CDY56436 | Canola | extracellular, vacuole | 35.98 | 12.45 |
| CDY13383 | Canola | extracellular | 33.54 | 12.36 |
| CDY05907 | Canola | cytosol | 31.71 | 11.87 |
| CDY05885 | Canola | extracellular | 33.54 | 11.85 |
| CDY08095 | Canola | extracellular, plasma membrane | 34.76 | 11.52 |
| CDY39678 | Canola | extracellular | 33.54 | 11.51 |
| CDY20264 | Canola | extracellular | 33.54 | 11.51 |
| CDY08113 | Canola | extracellular | 31.71 | 11.4 |
| CDX86247 | Canola | plasma membrane, plastid | 34.76 | 11.38 |
| CDX96676 | Canola | extracellular, golgi, plastid | 32.32 | 10.45 |
| CDX83782 | Canola | extracellular, golgi, plastid | 32.32 | 10.45 |
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 29.88 | 9.78 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 29.88 | 9.76 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 21.34 | 7.32 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 21.34 | 7.32 |
| CDY10899 | Canola | cytosol | 3.05 | 5.21 |
| CDY10898 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:35.1 | GO:A0A078C6D3 | EnsemblPlants:CDX71719 | ProteinID:CDX71719 | ProteinID:CDX71719.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00155410001 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 |
| PANTHER:PTHR31339:SF9 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | UniParc:UPI0004EF4122 | SEG:seg |
Description
BnaC08g31550D
Coordinates
chrLK031795:-:125205..126745
Molecular Weight (calculated)
19054.9 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.063
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLNARRFFS ALRADLYFKS KLVECVSLTS YGRGRELPGK RHRSLLYGQI LTDVVIKGEN GTTDGQGSKW WDWFRNGELN YTRPHLVELM NSTGLIISNL
101: TFLNLPFRNF FFFFFFFFLE QPFWNIHPVY CMPDVVVKNL TIFASLDSPN TDGVDPGEFL MNLN
101: TFLNLPFRNF FFFFFFFFLE QPFWNIHPVY CMPDVVVKNL TIFASLDSPN TDGVDPGEFL MNLN
001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W
Arabidopsis Description
AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.