CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018023.1-P	Field mustard	extracellular	93.74	98.93
CDY05885	Canola	extracellular	89.49	95.47
AT3G48950.1	Thale cress	extracellular	81.82	86.35
CDY69951	Canola	cytosol	18.79	73.81
CDY05907	Canola	cytosol	64.85	73.29
CDY08113	Canola	extracellular	66.06	71.71
CDY20264	Canola	extracellular	68.48	70.92
CDY39678	Canola	extracellular	68.28	70.71
CDY10898	Canola	cytosol	7.27	70.59
CDY70893	Canola	cytosol	49.09	67.88
KRG91587	Soybean	cytosol, extracellular, plastid	33.13	67.21
KRH35239	Soybean	extracellular, plasma membrane, plastid	63.64	65.62
CDY69255	Canola	cytosol	49.7	65.43
KRH35240	Soybean	extracellular	61.82	64.97
KRH35238	Soybean	extracellular	59.6	63.3
KRH38380	Soybean	extracellular	60.61	63.03
KRH08861	Soybean	extracellular	60.61	62.89
CDY48913	Canola	extracellular	57.78	60.72
CDY65355	Canola	extracellular	57.78	60.59
CDY44105	Canola	cytosol, nucleus, plasma membrane	55.15	60.4
CDY10899	Canola	cytosol	11.52	59.38
Solyc03g007950.2.1	Tomato	extracellular	54.14	57.39
PGSC0003DMT400024595	Potato	cytosol	53.54	55.56
VIT_16s0050g01120.t01	Wine grape	cytosol	20.0	52.94
CDY47619	Canola	extracellular, vacuole	40.61	45.27
CDY03516	Canola	extracellular, vacuole	40.61	45.27
CDY53228	Canola	extracellular	10.1	44.64
CDY10970	Canola	extracellular, vacuole	40.2	44.12
CDX94222	Canola	extracellular	40.2	44.12
CDY46115	Canola	extracellular	41.62	43.55
CDX67875	Canola	extracellular, golgi	40.0	43.23
CDX75352	Canola	extracellular	41.21	43.22
CDX68976	Canola	extracellular	40.81	42.89
CDY25090	Canola	extracellular, golgi	39.6	42.79
CDX82390	Canola	extracellular	38.59	42.54
CDX92101	Canola	extracellular, golgi	38.99	42.42
CDY54633	Canola	extracellular	38.38	42.41
CDX72404	Canola	extracellular	40.4	42.28
CDY11403	Canola	extracellular, plasma membrane	39.19	42.17
CDX95899	Canola	extracellular	38.38	41.94
CDY10897	Canola	cytosol, extracellular, peroxisome	20.2	41.84
CDY33922	Canola	extracellular	36.97	41.22
CDY13383	Canola	extracellular	36.97	41.12
CDY08036	Canola	cytosol, nucleus, vacuole	31.31	41.11
CDX67513	Canola	extracellular	36.97	40.94
CDX76617	Canola	extracellular, plasma membrane	37.98	40.87
CDX74085	Canola	cytoskeleton, cytosol, vacuole	30.91	40.26
CDX96676	Canola	extracellular, golgi, plastid	39.39	38.46
CDX83782	Canola	extracellular, golgi, plastid	39.39	38.46
CDY05643	Canola	extracellular, plasma membrane, plastid	36.97	38.28
CDY56436	Canola	extracellular, vacuole	36.57	38.19
CDY27797	Canola	extracellular, mitochondrion, plastid	37.58	37.13
CDY41934	Canola	extracellular, mitochondrion, plastid	37.58	37.05
CDX86247	Canola	plasma membrane, plastid	36.57	36.13
CDX71719	Canola	mitochondrion	11.52	34.76
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	62.83	29.59
CDY02392	Canola	extracellular, plasma membrane, vacuole	21.82	22.59
CDY12962	Canola	extracellular, plasma membrane, vacuole	21.82	22.59
CDY11375	Canola	mitochondrion	19.19	18.74

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:A0A078F0W5	UniProt:A0A078F0W5	EnsemblPlants:CDY08095	ProteinID:CDY08095
ProteinID:CDY08095.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00125368001	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0004EED92F	SEG:seg

Description

BnaA06g16310DBnaA06g16310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0W5]

Coordinates

chrLK031983:+:264097..271731

Molecular Weight (calculated)

54748.9 Da

IEP (calculated)

8.400

GRAVY (calculated)

-0.135

Length

495 amino acids

Sequence
(BLAST)

001: MFIFHKQSNQ KEDIPLFFLC YFKYLKMIRL VFGILVLFAL FRFPTIESRS HHHSAYSGIE FPALNCRKHK AVITDFGGVG DGKTSNTKAF RTALSKLSDL
101: ASDGGAQLVV PPGKWLTGSF NLTSHFTLFI QKGATILASQ DESEWPVVAP LPSYGKGRDG TGTGRFNSLI SGTNLTDVVI TGNNGTINGQ GQYWWDKFKK
201: KQFNLTRPYM IELLFSQNIQ ISNITLVDSP SWHIHPVYCN NVIVKSITII APVDVPNTDG INPDSCTNTL IEDCYIVSGD DCIAVKSGWD QYGIKFGMPT
301: QQLSIRRLTC ISPKSAGVAL GSEMSGGIKD VRIEDVTLIN TESSVRIKTA AGRGAYVKDI YARRFTMKTM KYVFWMSGNY NQHPDEGYDP KALPEVSNIN
401: FSDMTAENVT MSASLAGIDK DPFTGICISN VNITLSAKPK EVQWNCTDVA GVTRRVKPEP CSLLPEKKTE GKNMDCMFPS DLIPIESVVL KKCSL

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.