CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96676	Canola	extracellular, golgi, plastid	98.42	98.42
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	90.73	90.91
KRH19342	Soybean	endoplasmic reticulum	72.78	75.15
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	72.78	75.0
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	71.79	73.83
KRH12568	Soybean	plastid	70.22	72.8
KRH37525	Soybean	extracellular, plasma membrane	70.22	72.06
GSMUA_Achr5P22120_001	Banana	extracellular	69.43	71.54
GSMUA_Achr9P18190_001	Banana	mitochondrion	69.03	71.28
GSMUA_Achr3P10280_001	Banana	mitochondrion	67.06	70.98
CDY53228	Canola	extracellular	15.58	70.54
PGSC0003DMT400007594	Potato	extracellular	68.84	70.51
Solyc12g009210.1.1	Tomato	nucleus	68.24	69.9
Solyc07g042160.2.1	Tomato	nucleus	67.46	69.23
TraesCS6B01G371200.2	Wheat	mitochondrion	67.46	69.09
CDY27797	Canola	extracellular, mitochondrion, plastid	67.85	68.66
EES05901	Sorghum	extracellular, golgi	67.65	68.6
TraesCS6A01G340000.1	Wheat	mitochondrion	66.86	68.48
TraesCS6D01G320600.1	Wheat	mitochondrion	66.86	68.48
Os02t0781000-01	Rice	extracellular	38.46	68.42
CDY41934	Canola	extracellular, mitochondrion, plastid	67.65	68.33
Zm00001d052103_P001	Maize	plasma membrane	66.47	68.08
GSMUA_Achr11P...	Banana	mitochondrion	62.33	64.36
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.74	62.73
CDY69951	Canola	cytosol	13.21	53.17
CDX68976	Canola	extracellular	41.03	44.16
CDY47619	Canola	extracellular, vacuole	38.66	44.14
CDY03516	Canola	extracellular, vacuole	38.46	43.92
CDX75352	Canola	extracellular	40.63	43.64
CDY13383	Canola	extracellular	38.26	43.6
CDX94222	Canola	extracellular	38.66	43.46
CDX67513	Canola	extracellular	38.26	43.4
CDY46115	Canola	extracellular	40.43	43.34
CDY10970	Canola	extracellular, vacuole	38.46	43.24
CDY10898	Canola	cytosol	4.34	43.14
CDX72404	Canola	extracellular	40.24	43.13
CDY05885	Canola	extracellular	37.87	41.38
CDY05907	Canola	cytosol	35.11	40.64
CDY70893	Canola	cytosol	28.4	40.22
CDX92101	Canola	extracellular, golgi	35.9	40.0
CDY08036	Canola	cytosol, nucleus, vacuole	29.39	39.52
CDX67875	Canola	extracellular, golgi	35.7	39.52
CDY08095	Canola	extracellular, plasma membrane	38.46	39.39
CDY25090	Canola	extracellular, golgi	35.5	39.3
CDX95899	Canola	extracellular	35.11	39.29
CDY69255	Canola	cytosol	28.99	39.1
CDY54633	Canola	extracellular	34.52	39.06
CDX82390	Canola	extracellular	34.52	38.98
CDY33922	Canola	extracellular	34.12	38.96
CDX74085	Canola	cytoskeleton, cytosol, vacuole	29.19	38.95
CDY11403	Canola	extracellular, plasma membrane	35.31	38.91
CDY08113	Canola	extracellular	34.71	38.6
CDY44105	Canola	cytosol, nucleus, plasma membrane	34.12	38.27
CDX76617	Canola	extracellular, plasma membrane	34.71	38.26
CDY65355	Canola	extracellular	35.31	37.92
CDY48913	Canola	extracellular	34.91	37.58
CDY20264	Canola	extracellular	35.31	37.45
CDY39678	Canola	extracellular	35.11	37.24
CDY10897	Canola	cytosol, extracellular, peroxisome	16.96	35.98
CDY56436	Canola	extracellular, vacuole	33.14	35.44
CDY05643	Canola	extracellular, plasma membrane, plastid	33.14	35.15
CDX86247	Canola	plasma membrane, plastid	32.74	33.13
CDX71719	Canola	mitochondrion	10.45	32.32
CDY12962	Canola	extracellular, plasma membrane, vacuole	21.1	22.38
CDY02392	Canola	extracellular, plasma membrane, vacuole	20.91	22.18
CDY11375	Canola	mitochondrion	18.34	18.34
CDY10899	Canola	cytosol	2.76	14.58

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:A0A078D3S8	EnsemblPlants:CDX83782	ProteinID:CDX83782	ProteinID:CDX83782.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00139527001	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0004EB9606	SEG:seg

Description

BnaC08g18630D

Coordinates

chrLK031834:-:425760..428244

Molecular Weight (calculated)

56151.5 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.159

Length

507 amino acids

Sequence
(BLAST)

001: MVETLLPSRF QSHLQKLDPK RRLLTSTIAS HKTLLFAFLW IAAFASVFLW QRPSYIGGYV VGPVAGGRFT VFGKVKPLQP VPRLRPAVFD LKEFGGVGDG
101: VAVNTEAFER AVVEISKLGG GGGGQLNVPP GRWLTAPFNL TSHMTLFLAE DCEILGVEDE KFWPLMPPLP SYGYGRERPG PRYGSLIHGQ NLKDVVITGH
201: NGTINGQGQS WWKKHQRRLL NNTRGPLVQI MWSSDIVIAN VTLRDSPFWT LHPYDCKNVT IRNVTILAPV TGAPNTDGID PDSCEDMVIE DCYISTGDDA
301: IAIKSGWDQF GIAYGRPSTN ILIRNLIVRS VISAGVSIGS EMSGGISNVT IENLLIWNSR RGVRIKTAQG RGGYIKNITY KNVTLDNVRV GIVIKTDYNE
401: HADDNYDRKA YPTLSGFSFS GIHGQGVRVP VRIHGSEQIP VRNVTFRDMS VGLTYKKKHI FQCSFVKGRV IGSIFPRPCE NFDVYDEEGR LVKPATESTV
501: PDIDYDI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.