Factsheet for Solyc12g009210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007594	Potato	extracellular	98.99	98.99
Solyc07g042160.2.1	Tomato	nucleus	79.8	79.96
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	77.37	77.69
KRH19342	Soybean	endoplasmic reticulum	75.96	76.58
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	75.76	76.22
GSMUA_Achr5P22120_001	Banana	extracellular	73.13	73.58
GSMUA_Achr9P18190_001	Banana	mitochondrion	72.93	73.52
GSMUA_Achr3P10280_001	Banana	mitochondrion	70.71	73.07
KRH12568	Soybean	plastid	70.3	71.17
KRH37525	Soybean	extracellular, plasma membrane	70.51	70.65
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	70.71	69.17
Os02t0781000-01	Rice	extracellular	39.6	68.77
CDX83782	Canola	extracellular, golgi, plastid	69.9	68.24
CDX96676	Canola	extracellular, golgi, plastid	69.9	68.24
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	69.7	68.05
Solyc03g117750.2.1	Tomato	extracellular, golgi	66.87	67.97
EES05901	Sorghum	extracellular, golgi	66.67	66.0
Zm00001d052103_P001	Maize	plasma membrane	65.66	65.66
GSMUA_Achr11P...	Banana	mitochondrion	65.05	65.58
TraesCS6B01G371200.2	Wheat	mitochondrion	65.25	65.25
TraesCS6A01G340000.1	Wheat	mitochondrion	64.65	64.65
TraesCS6D01G320600.1	Wheat	mitochondrion	64.65	64.65
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	64.65	64.13
Solyc08g082170.2.1	Tomato	nucleus	41.21	43.68
Solyc01g094970.2.1	Tomato	extracellular	34.55	42.01
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	40.81	41.39
Solyc03g007950.2.1	Tomato	extracellular	38.38	40.69
Solyc08g081480.2.1	Tomato	extracellular	38.59	39.54
Solyc06g009790.2.1	Tomato	extracellular	35.15	38.07
Solyc05g049980.2.1	Tomato	extracellular	36.97	37.65
Solyc09g075460.2.1	Tomato	extracellular	35.56	36.67
Solyc03g051770.2.1	Tomato	cytosol	12.93	20.32
Solyc06g030520.1.1	Tomato	cytosol	3.64	15.79

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K4DC09	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc12g009210.1	EnsemblPlants:Solyc12g009210.1.1
TMHMM:TMhelix	UniParc:UPI0002769836	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:2490735..2496842

Molecular Weight (calculated)

55531.7 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.141

Length

495 amino acids

Sequence
(BLAST)

001: MVETVTSSFW WRWTQPHHHP RRWVPSVFTT HKAIITAVWI AFLVTVFWWQ VDATAGILIF RRVFPAREVP KFRPVAFNLT DFGGVGDGVT VNTEAFEKAI
101: LAIAKLGKKG GGQLNVPPGY WLTAPFNLTS HMTLFLAEGA VILGIDDEKY WPLMPPLPSY GYGREHRGPR YGSLIHGQKL KDVIITGHNG TINGQGQAWW
201: KKFRQKLLNH SRGPLVQIMW STDILISNIT LQDSPFWTLH PYDCKNVTIR NVTILAPIAG APNTDGIDPD SCEDVLIENC YISVGDDGIA IKSGWDQYGI
301: AYGRPSKNIL IRNLVIRSNV SAGVSIGSEM SGGVSNVTVE NLFIWNSRRA VRIKTAPGRG GYVRDITYKN LTFENVRVGI VIKTDYNEHA DESFDPKAVP
401: LLENISYTTI HGEGVRVPVQ IHGSKEIWVR NVTFRDMSIG LTYKKKHIFQ CAYVQGRVIG TIFPAPCKNL DLYDEQGHLI RRSDAQNATD IDYDI

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.