Factsheet for Solyc03g051770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	96.83	64.08
KRG95330	Soybean	extracellular, plasma membrane, vacuole	72.7	49.14
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	72.7	47.61
GSMUA_Achr3P11090_001	Banana	extracellular	67.94	46.12
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	70.16	45.1
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	65.4	45.08
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	67.94	44.77
CDY02392	Canola	extracellular, plasma membrane, vacuole	67.94	44.77
CDY12962	Canola	extracellular, plasma membrane, vacuole	67.94	44.77
TraesCS5A01G264400.2	Wheat	unclear	64.76	44.64
Os09t0487600-01	Rice	extracellular	64.44	44.42
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	65.08	44.18
EER99085	Sorghum	extracellular, plasma membrane	64.76	44.16
HORVU3Hr1G088950.1	Barley	extracellular	63.49	44.05
TraesCS3A01G393600.1	Wheat	extracellular	63.17	43.83
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	64.13	43.72
TraesCS3D01G387300.1	Wheat	unclear	62.54	43.39
Zm00001d020931_P001	Maize	extracellular	63.49	43.01
Solyc03g007950.2.1	Tomato	extracellular	20.95	14.13
Solyc08g081480.2.1	Tomato	extracellular	21.27	13.87
Solyc05g049980.2.1	Tomato	extracellular	21.27	13.79
Solyc03g117750.2.1	Tomato	extracellular, golgi	20.95	13.55
Solyc08g082170.2.1	Tomato	nucleus	20.0	13.49
Solyc06g009790.2.1	Tomato	extracellular	19.05	13.13
Solyc01g094970.2.1	Tomato	extracellular	16.83	13.02
Solyc07g042160.2.1	Tomato	nucleus	20.32	12.96
Solyc12g009210.1.1	Tomato	nucleus	20.32	12.93
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	19.68	12.7
Solyc09g075460.2.1	Tomato	extracellular	18.73	12.29
Solyc06g030520.1.1	Tomato	cytosol	3.81	10.53

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K4BGI3	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc03g051770.2	EnsemblPlants:Solyc03g051770.2.1	UniParc:UPI0002768908	SEG:seg

Description

No Description!

Coordinates

chr3:+:20620025..20629877

Molecular Weight (calculated)

35319.9 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.215

Length

315 amino acids

Sequence
(BLAST)

001: MVSWNHTGAC LGDECRPRLV GFIGCRNIKV SDVRLIEPAY WCLHVVRSDK TSICDVIIYG NFNSPNNDGI DIEDSNNTVI TRCNINTGDD AICPKSSNGP
101: VYNLTVTDCW IRTKSSAIKL GSASFYTFKN FLFDNITIVE SHRGLALQIR DGGNVSDMIF SNINISTRYY HPSWWGRAEP IYVTTCPRDA SSKAGSISNL
201: LFVNITATSE NGIFLSGSGG GVLSNLKFVN MNLTYKRWTK FPDGLVDYRP GCQELVKHQP AGFMMEHIDG LVVKDVVMKW SSDESMRWNN PLDFRPSTVN
301: NISLLNFYSR AYEQQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.