Factsheet for Os09t0487600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	89.06	89.06
TraesCS5A01G264400.2	Wheat	unclear	88.18	88.18
EER99085	Sorghum	extracellular, plasma membrane	88.4	87.45
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	88.18	86.85
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	87.53	86.58
TraesCS3D01G387300.1	Wheat	unclear	84.68	85.24
Zm00001d020931_P001	Maize	extracellular	86.21	84.73
TraesCS3A01G393600.1	Wheat	extracellular	83.81	84.36
HORVU3Hr1G088950.1	Barley	extracellular	83.15	83.7
GSMUA_Achr3P11090_001	Banana	extracellular	70.24	69.18
Solyc03g051770.2.1	Tomato	cytosol	44.42	64.44
KRG95330	Soybean	extracellular, plasma membrane, vacuole	63.46	62.23
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	64.11	60.91
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	61.05	58.37
CDY02392	Canola	extracellular, plasma membrane, vacuole	61.05	58.37
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	62.58	58.37
CDY12962	Canola	extracellular, plasma membrane, vacuole	60.83	58.16
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	58.42	56.09
Os02t0781000-01	Rice	extracellular	15.1	24.21
Os12t0554800-01	Rice	cytosol, extracellular	22.1	23.82
Os09t0439400-01	Rice	plastid	26.7	23.19
Os02t0256100-01	Rice	extracellular	22.32	23.02
Os03t0833800-01	Rice	extracellular	23.85	22.9
Os11t0658800-01	Rice	extracellular	21.88	22.27
Os06t0106800-01	Rice	extracellular	23.63	22.27
Os08t0107300-00	Rice	extracellular, mitochondrion	23.41	22.2
Os01t0618900-01	Rice	cytosol, extracellular	15.54	21.58
Os03t0124900-01	Rice	extracellular	21.44	21.4
Os05t0587000-01	Rice	extracellular	20.79	21.21
Os07t0245200-01	Rice	plasma membrane	20.57	21.08

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4347428	MapMan:50.3.2	UniProt:A0A0P0XNS4	ProteinID:BAT08711.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os09g0487600	EnsemblPlants:Os09t0487600-01	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF10	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00018F0E1B	RefSeq:XP_015651424.1	SEG:seg	:	:

Description

Similar to polygalacturonase. (Os09t0487600-01)

Coordinates

chr9:-:18801173..18803450

Molecular Weight (calculated)

49958.3 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.157

Length

457 amino acids

Sequence
(BLAST)

001: MASPLLLLLP LAVSSLLLPF AAAARVFSVA DYGAAGDGAR YDTGAIQAAV DACAAAGGGR VLLPAPGDYL TATVHLRSRV VLDVAPGARL LGGTRQADYP
101: PESRRWYVVL AENTTGAGVT GGGEINGQGG AFVVTPNPQK NIMVSWNATG DCEGDECRPR LVGFIDSKDV TIHDITLNQP AYWCLHIVRC DNTMIHNVSI
201: YGDFDTPNND GIDIEDSNNT AITHCHIDTG DDAICPKSTT GPVYNLTATN CWIRTKSCAI KFGSASFFDF KKLVFDNITI VDSHRGLGMQ IRDGGNVSDV
301: VFSNIKMSTR YYHPLWWGRA EPIYITTCPR HPDSKEGTIS DIQFINISSV SENGVFLAGS KHGLLRNLKF KNVDLTYKRW TNYSGGLYDY RPGCQKMVKH
401: RTGGMMLEHI SGLEIDNVRM RWSRGSLKGW DVDPLLFQPS TVDKLSFHDW QSLAVSR

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.