Factsheet for Os07t0245200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96131	Sorghum	extracellular, mitochondrion	83.41	74.55
Zm00001d019282_P001	Maize	mitochondrion	82.51	72.44
Os03t0833800-01	Rice	extracellular	76.46	71.64
GSMUA_Achr8P06180_001	Banana	extracellular	62.11	70.48
GSMUA_AchrUn_...	Banana	extracellular	61.21	69.47
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	61.21	58.58
KRH69147	Soybean	nucleus	59.64	57.33
KRG96607	Soybean	extracellular	60.09	57.27
KRH68340	Soybean	nucleus	59.42	56.62
Os01t0618900-01	Rice	cytosol, extracellular	41.7	56.53
KRH33649	Soybean	nucleus	58.74	56.47
AT3G62110.1	Thale cress	vacuole	58.07	54.99
CDY25090	Canola	extracellular, golgi	55.61	54.15
Bra003485.1-P	Field mustard	extracellular, golgi	55.38	53.93
CDX67875	Canola	extracellular, golgi	55.38	53.93
Bra007662.1-P	Field mustard	extracellular, plasma membrane	53.81	52.17
CDY11403	Canola	extracellular, plasma membrane	53.59	51.96
CDX76617	Canola	extracellular, plasma membrane	52.47	50.87
Os12t0554800-01	Rice	cytosol, extracellular	45.96	48.35
Os05t0587000-01	Rice	extracellular	47.31	47.1
Os11t0658800-01	Rice	extracellular	47.09	46.77
Os06t0106800-01	Rice	extracellular	49.55	45.57
Os03t0124900-01	Rice	extracellular	44.39	43.23
Os02t0256100-01	Rice	extracellular	42.83	43.12
Os02t0781000-01	Rice	extracellular	27.35	42.81
Os08t0107300-00	Rice	extracellular, mitochondrion	45.74	42.32
Os09t0439400-01	Rice	plastid	40.13	34.03
Os09t0487600-01	Rice	extracellular	21.08	20.57

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4342825	MapMan:50.3.2	ProteinID:BAC82923.1	ProteinID:BAF21196.1	ProteinID:BAT00806.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os07g0245200	EnsemblPlants:Os07t0245200-01	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q6ZLN7
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00001BF13C	RefSeq:XP_015644766.1

Description

Similar to Polygalacturonase-like protein. (Os07t0245200-01)

Coordinates

chr7:-:8078976..8082653

Molecular Weight (calculated)

48336.2 Da

IEP (calculated)

5.940

GRAVY (calculated)

-0.045

Length

446 amino acids

Sequence
(BLAST)

001: MMSRSASALQ VLLVFATVFA ATQWATSSAM YCNDLTASVH RPHNKGGAEL FVPAGRWLTG SFNLISHLTV SLDADAVIIG SQDSSDWPVI DPLPSYGRGR
101: ELPGKRHQSL IFGSNLTDVI ITGANGTIDG QGELWWNWFH NHTLNYTRPP LLELMYSDRV VISNLTFMNA PFWNIHPVYC SQVLVQHLTI LAPISSPNTD
201: GIDPDSSSNV CIEDCYIRNG DDIVVIKSGW DEYGISFAHP SSNISIRNIT GQTRNSAGIA FGSEMSGGIS DVRAEGLRFI NSVHGIRIKT APGRGGYVKN
301: IYIADVSMDN VSIAIRITGN YGEHPDDNYD KNALPVISNI TIKNVVGVNI GTAGMLLGIQ GDIFSNICLS NVSLSSKSAD PWNCSLIEGF SNSVAPEICE
401: QLRPSPGPGQ VCYDGNSYPV PAAQQPYKSG ATRLQNPFLK FISLYS

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.