Factsheet for Bra007662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11403	Canola	extracellular, plasma membrane	98.91	98.91
Bra003485.1-P	Field mustard	extracellular, golgi	89.13	89.52
AT3G62110.1	Thale cress	vacuole	90.87	88.75
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	66.09	65.24
KRH33649	Soybean	nucleus	65.0	64.44
KRH69147	Soybean	nucleus	64.78	64.22
KRG96607	Soybean	extracellular	65.0	63.89
KRH68340	Soybean	nucleus	64.57	63.46
GSMUA_Achr8P06180_001	Banana	extracellular	53.04	62.09
GSMUA_AchrUn_...	Banana	extracellular	52.61	61.58
TraesCS4A01G358700.1	Wheat	extracellular	58.04	59.47
Os03t0833800-01	Rice	extracellular	59.78	57.77
EER90587	Sorghum	extracellular	59.35	57.47
TraesCS5B01G513100.1	Wheat	extracellular	58.7	56.72
HORVU5Hr1G117470.3	Barley	extracellular	58.04	56.09
EER96131	Sorghum	extracellular, mitochondrion	60.0	55.31
Os07t0245200-01	Rice	plasma membrane	52.17	53.81
Zm00001d019282_P001	Maize	mitochondrion	59.13	53.54
Zm00001d034727_P003	Maize	plastid	58.91	52.83
TraesCS5D01G513600.1	Wheat	plastid	58.48	50.66
Bra022182.1-P	Field mustard	extracellular, golgi	46.3	47.02
Bra001642.1-P	Field mustard	vacuole	45.22	46.12
Bra013734.1-P	Field mustard	extracellular, vacuole	44.35	45.95
Bra011440.1-P	Field mustard	extracellular	46.96	45.57
Bra037429.1-P	Field mustard	extracellular	43.7	45.27
Bra001215.1-P	Field mustard	extracellular	44.13	45.21
Bra028511.1-P	Field mustard	extracellular	43.48	44.74
Bra019264.1-P	Field mustard	extracellular, vacuole	43.7	44.57
Bra037005.1-P	Field mustard	extracellular	46.09	44.44
Bra019299.1-P	Field mustard	extracellular, plasma membrane	46.74	43.61
Bra013697.1-P	Field mustard	extracellular, plasma membrane	46.52	43.41
Bra007609.1-P	Field mustard	extracellular	44.35	43.4
Bra018004.1-P	Field mustard	cytosol	41.09	43.25
Bra020656.1-P	Field mustard	extracellular, plasma membrane	43.7	42.77
Bra018023.1-P	Field mustard	extracellular	42.17	41.36
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	39.13	35.5
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	38.7	35.46
Bra032138.1-P	Field mustard	cytosol	40.87	23.5
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	23.48	22.59
Bra007626.1-P	Field mustard	mitochondrion	25.43	20.14

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra007662	EnsemblPlants:Bra007662.1	EnsemblPlants:Bra007662.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CTW8	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF9
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0002542AB6

Description

AT3G62110 (E=1e-191) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA09:-:30310202..30312253

Molecular Weight (calculated)

50714.9 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.146

Length

460 amino acids

Sequence
(BLAST)

001: MLVFDVGYLQ LSYVLLVHAF YGAWCSVGGS LHCEYSNSLT LHRPHSVSIT EFGAVGDGVT LNTKAFQNAL FYLNTFSDKG GAKLFVPAGQ WLTGSFDLIS
101: HLTLWLDKGA TILGSTARRE LPGRRHRSLI YGQNLTDVVI TGENGTIDGQ GSIWWDWFRN GELNYTRPHL VELMNSTGLI ISNLTFLNSP FWNIHPVYCR
201: DVVVKNLTIL APLDSPNTDG VDPDSSTNVC IEDCYIVTGD DLVSIKSGWD EYGISYARPS SKIKINRLTG QTTSSSGIAI GSEMSGGVSD IYIKDLHLFN
301: SNTGIRIKTS PGRGGYVRNV HVSNVKLDNV KKAIRFTGKY GEHPDGNFDT KALPAIEKIT FENVSGEDIG VAGLLEGIEG DEFKNICFLN VTLTVKKNSK
401: KAPWRCSNVR GYSQWVSPEI TCDSFEESIF PEHSSDCFGL SENNVETSSG LSRSPWLLFW

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.