Factsheet for Zm00001d034727_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90587	Sorghum	extracellular	87.13	94.11
Os03t0833800-01	Rice	extracellular	79.14	85.29
TraesCS4A01G358700.1	Wheat	extracellular	73.88	84.41
TraesCS5B01G513100.1	Wheat	extracellular	76.02	81.93
HORVU5Hr1G117470.3	Barley	extracellular	74.46	80.25
TraesCS5D01G513600.1	Wheat	plastid	75.44	72.88
GSMUA_Achr8P06180_001	Banana	extracellular	54.19	70.74
Zm00001d019282_P001	Maize	mitochondrion	69.4	70.08
GSMUA_AchrUn_...	Banana	extracellular	52.63	68.7
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	59.26	65.24
KRH69147	Soybean	nucleus	57.5	63.58
KRG96607	Soybean	extracellular	57.5	63.03
KRH33649	Soybean	nucleus	56.53	62.5
KRH68340	Soybean	nucleus	56.92	62.39
AT3G62110.1	Thale cress	vacuole	56.73	61.78
CDY25090	Canola	extracellular, golgi	54.19	60.7
Bra003485.1-P	Field mustard	extracellular, golgi	53.61	60.04
CDX67875	Canola	extracellular, golgi	53.61	60.04
Bra007662.1-P	Field mustard	extracellular, plasma membrane	52.83	58.91
CDY11403	Canola	extracellular, plasma membrane	52.83	58.91
CDX76617	Canola	extracellular, plasma membrane	51.85	57.83
Zm00001d023813_P001	Maize	extracellular, vacuole	45.42	50.54
Zm00001d018548_P001	Maize	cytosol	21.64	47.84
Zm00001d048696_P001	Maize	extracellular	46.0	47.77
Zm00001d009717_P001	Maize	extracellular	40.74	46.86
Zm00001d010681_P001	Maize	cytosol	25.73	46.64
Zm00001d011369_P001	Maize	extracellular	39.18	45.17
Zm00001d035899_P001	Maize	extracellular	41.91	44.24
Zm00001d027441_P001	Maize	plasma membrane	39.57	43.84
Zm00001d053395_P001	Maize	extracellular	38.4	43.68
Zm00001d034990_P001	Maize	plasma membrane	41.72	43.41
Zm00001d021964_P001	Maize	cytosol	13.06	39.88
Zm00001d052103_P001	Maize	plasma membrane	36.84	38.18
Zm00001d020615_P001	Maize	plastid	35.87	35.66
Zm00001d020931_P001	Maize	extracellular	19.88	21.94

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6LAC7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	ProteinID:ONM11081.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI00084407AE	EnsemblPlantsGene:Zm00001d034727
EnsemblPlants:Zm00001d034727_P003	EnsemblPlants:Zm00001d034727_T003	SEG:seg	:	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr1:-:300812557..300816835

Molecular Weight (calculated)

55506.0 Da

IEP (calculated)

6.934

GRAVY (calculated)

0.004

Length

513 amino acids

Sequence
(BLAST)

001: MKRSASVSAP PYCPCPCRAP RLPGSREAQG TMDRAVTRHG VPLFQVLLVF TAVIEIQWST VSSIYCKDMP PNVYRPHSVT ITEFGAVGDG VTLNTKAFQN
101: AIFYLNSFAD KGGAQLFVPA GRWLTGSFHL ISHLTLSLDK DAIIIGSPDS SHWPVIDPLP SYGRGRDLPG KRHQSLIFGL NLTDVIITGA NGSIDGQGAI
201: WWGWFHNHTL NYTRPHLVEL MYSTNVVISN LTFKNSPFWN IHPVYCSQVL VRHVTILAPL NSPNTDGVTP DSSTNVCINH CYVRNGGDVI VIKSGWDEYG
301: ISFAQPSSNI SISDITGETR GGSGIAFGSE MSGGISEVRA VGLRIVNSLH GIRIKTAPGR GGYVENVYIA DVSMDNVSMA IRITGNYGEH PDDKYDSTAL
401: PVISNITIKD VVGVNIGVAG ILEGIQGDNF SNICLSNVSL SVQSAHPWNC SLIEGYSNSV IPESCEQLRS NCRQTSICYD GSSSSVMSVQ QPRHTSPTSR
501: LLDLFTGVGF ILV

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.