Factsheet for Zm00001d020931_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99085	Sorghum	extracellular, plasma membrane	91.18	91.77
TraesCS5A01G264400.2	Wheat	unclear	84.95	86.43
Os09t0487600-01	Rice	extracellular	84.73	86.21
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	84.3	85.78
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	84.09	84.27
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	83.66	84.2
TraesCS3D01G387300.1	Wheat	unclear	81.08	83.04
TraesCS3A01G393600.1	Wheat	extracellular	80.22	82.16
HORVU3Hr1G088950.1	Barley	extracellular	79.35	81.28
GSMUA_Achr3P11090_001	Banana	extracellular	67.96	68.1
Solyc03g051770.2.1	Tomato	cytosol	43.01	63.49
KRG95330	Soybean	extracellular, plasma membrane, vacuole	62.15	62.02
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	63.01	60.91
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.78	58.16
CDY02392	Canola	extracellular, plasma membrane, vacuole	59.78	58.16
CDY12962	Canola	extracellular, plasma membrane, vacuole	59.57	57.95
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.86	57.76
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	57.42	56.09
Zm00001d052103_P001	Maize	plasma membrane	25.81	24.24
Zm00001d021964_P001	Maize	cytosol	8.6	23.81
Zm00001d009717_P001	Maize	extracellular	22.58	23.54
Zm00001d023813_P001	Maize	extracellular, vacuole	23.23	23.43
Zm00001d053395_P001	Maize	extracellular	22.58	23.28
Zm00001d027441_P001	Maize	plasma membrane	22.58	22.68
Zm00001d020615_P001	Maize	plastid	24.95	22.48
Zm00001d035899_P001	Maize	extracellular	23.01	22.02
Zm00001d011369_P001	Maize	extracellular	20.65	21.57
Zm00001d018548_P001	Maize	cytosol	10.75	21.55
Zm00001d034990_P001	Maize	plasma membrane	22.58	21.3
Zm00001d019282_P001	Maize	mitochondrion	22.8	20.87
Zm00001d048696_P001	Maize	extracellular	22.15	20.85
Zm00001d034727_P003	Maize	plastid	21.94	19.88
Zm00001d010681_P001	Maize	cytosol	11.83	19.43

Protein Annotations

EntrezGene:100282589	Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6I6Y0	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	ProteinID:ONM55825.1	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF10	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0008423FC2
EnsemblPlantsGene:Zm00001d020931	EnsemblPlants:Zm00001d020931_P001	EnsemblPlants:Zm00001d020931_T001	SEG:seg	:	:

Description

Polygalacturonase

Coordinates

chr7:-:136913647..136915619

Molecular Weight (calculated)

51290.1 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.166

Length

465 amino acids

Sequence
(BLAST)

001: MTSPIQLAAA PLLLLVVVVA GTRSSRIFSV ADYGAAGDGF RYDTAAIQAA VDACAAAGGG RVLLPAPGNY LTATVQLRSR VVLEVPPGAR LLGGTRQADY
101: PPESRRWYVV LAENTTGAGI TGGGEINGQG GAFVVRPSEV KNVMVSWNAT GDCLGDECRP RLVGFIDSKD VRIHDITLNQ PAYWWLYTCI ARSLHLVRCD
201: NTVIHNVSIF GDFKTPNNDG IDIEDSNNTV ITDCHIDTGD DAISPKSTTG PVYNLTATNC WMRTKSCAIK FGSASFFDFK RLVFDNITIV DSHRGLGMQI
301: RDGGNVNDVV FSNIKMRTRY YHPLWWGRAE PIYITTCPRH PDSKEGAISD IRFINISSVS ENGVFLAGSK HGLLRNLKFK NIDLTYKRWT NYTGGLYDYR
401: PGCQEMVKHK TGGMMLEHIS GLEIDNVRMR WARGSLKGWN VNPILFRPST IDNLSFHDWQ SVDVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.